Files

• dir src Root of the source tree.
  • dir Base Basic, general, generic utilities, reused across all executables.
    • file Callback.hpp Tagged tuple types used for passing Charm++ callbacks.
    • file CartesianProduct.hpp Cartesian product using brigand.
    • file ChareState.hpp Charm++ chare state collector group.
    • file ChareStateCollector.cpp Charm++ chare state collector group.
    • file ChareStateCollector.hpp Charm++ chare state collector group.
    • file ContainerUtil.hpp Various STL container utilities.
    • file Data.hpp Generic data storage with different memory layouts.
    • file Escaper.hpp String escaper pulled over from PEGTL v0.32.
    • file Exception.cpp Exception class definition.
    • file Exception.hpp Exception class declaration.
    • file ExceptionMPI.hpp Exception macros interoperating with MPI.
    • file Factory.hpp Factory utilities.
    • file Fields.hpp Fields used to store data associated to mesh entities.
    • file Flip_map.hpp Flip a std::map yielding a multimap sorted by std::map::value_type.
    • file Has.hpp "Has-a" utilities for detecting class internals
    • file HashMapReducer.hpp Custom Charm++ reducer for merging std::unordered_maps across PEs.
    • file If.hpp Compile-time type selection.
    • file LoadDistributor.cpp Load distributors.
    • file LoadDistributor.hpp Load distributors and partitioning data types.
    • file Macro.hpp Macro definitions.
    • file Particles.hpp Particles used to store particle data.
    • file Print.hpp General purpose pretty printer functionality.
    • file PrintUtil.cpp String conversion utilities.
    • file PrintUtil.hpp String conversion utilities.
    • file ProcessControl.cpp POSIX process control wrapper definitions.
    • file ProcessControl.hpp POSIX process control wrapper definitions.
    • file ProcessException.cpp Process an exception.
    • file ProcessException.hpp Process an exception definition.
    • file Progress.hpp Simple progress indicator.
    • file PUPUtil.hpp Charm++ Pack/UnPack utilities.
    • file QEndian.hpp Swap endianness.
    • file Reader.cpp Reader class definition.
    • file Reader.hpp Reader base class declaration.
    • file Table.hpp Basic functionality for storing and sampling a discrete (y1,y2,...,yN) = f(x) function.
    • file TaggedTuple.hpp Tagged tuple allowing tag-based access.
    • file TaggedTupleDeepPrint.hpp Structured TaggedTuple printer with depth/indentation.
    • file TaggedTuplePrint.hpp Simple (unformatted, one-line) TaggedTuple printer.
    • file TeeBuf.hpp Tee stream buffer.
    • file Timer.cpp Timer definition.
    • file Timer.hpp Timer declaration.
    • file Types.hpp Toolkit-level type definitions.
    • file Vector.hpp Vector algebra.
    • file Writer.cpp Writer base class definition.
    • file Writer.hpp Writer base class declaration.
  • dir Control Command line and input file parsing and grammars for all executables.
    • dir FileConv Types, command line parsing, and grammar for FileConv
      • dir CmdLine Command line parsing and grammar for FileConv
        • file CmdLine.hpp FileConv's command line definition.
        • file Grammar.hpp FileConv's command line grammar definition.
        • file Parser.cpp FileConv's command line parser.
        • file Parser.hpp FileConv's command line parser.
    • dir Inciter Types, options, command line parsing, and grammar for Inciter
      • dir CmdLine Command line parsing and grammar for Inciter
        • file CmdLine.hpp Inciter's command line definition.
        • file Grammar.hpp Inciter's command line grammar definition.
        • file Parser.cpp Inciter's command line parser.
        • file Parser.hpp Inciter's command line parser.
      • dir InputDeck Input file parsing and grammar for Inciter
        • file Grammar.hpp Inciter's input deck grammar definition.
        • file Parser.cpp Inciter's input deck file parser.
        • file Parser.hpp Inciter's input deck file parser.
        • file InputDeck.hpp Inciter's input deck definition.
        • file LuaGrammar.hpp Inciter's input deck grammar definition using Lua.
      • dir Options Options for Inciter
        • file AMRError.hpp Options for computing error estimates for adaptive mesh refinement.
        • file AMRInitial.hpp Initial (before t=0) adaptive mesh refinement (AMR) options.
        • file BC.hpp Boundary condition options for inciter.
        • file Flux.hpp Flux function options for inciter.
        • file Initiate.hpp Initiation options for initial conditions.
        • file Limiter.hpp Limiter options for DG.
        • file Material.hpp Material types for inciter.
        • file MeshVelocity.hpp Mesh velocity configuration options for inciter.
        • file MeshVelocitySmoother.hpp Mesh velocity smoother configuration options for inciter.
        • file PDE.hpp Partial differential equation options and associations for inciter.
        • file Physics.hpp Physics options for inciter.
        • file PrefIndicator.hpp Options for adaptive indicators for p-adaptive DG scheme.
        • file Problem.hpp Problem options for inciter.
        • file Scheme.hpp Discretization scheme options for inciter.
      • file Types.hpp Types for Incitier's parsers.
      • file Components.hpp Storage for number of components.
      • file OutVar.hpp Types and associated functions to deal with output variables.
    • dir MeshConv Types, command line parsing, and grammar for MeshConv
      • dir CmdLine Command line parsing and grammar for MeshConv
        • file CmdLine.hpp MeshConv's command line definition.
        • file Grammar.hpp MeshConv's command line grammar definition.
        • file Parser.cpp MeshConv's command line parser.
        • file Parser.hpp MeshConv's command line parser.
      • file Types.hpp Types for FileConv's parsers.
    • dir Options Options for multiple executables.
      • file Error.hpp Error type options.
      • file FieldFile.hpp Field output file type options.
      • file MKLBetaMethod.hpp Intel MKL Beta RNG method options.
      • file MKLGammaMethod.hpp Intel MKL Gamma RNG method options.
      • file MKLGaussianMethod.hpp Intel MKL Gaussian RNG method options.
      • file MKLGaussianMVMethod.hpp Intel MKL multi-variate Gaussian RNG method options.
      • file MKLUniformMethod.hpp Intel MKL uniform RNG method options.
      • file PartitioningAlgorithm.hpp Mesh partitioning algorithm options.
      • file PDFCentering.hpp PDF output file centering type options.
      • file PDFFile.hpp PDF output file type options.
      • file PDFPolicy.hpp PDF output file policy options.
      • file RNG.hpp Random number generator options and associations.
      • file RNGSSESeqLen.hpp RNGSSE sequence length options.
      • file TxtFloatFormat.hpp Text floating-point output options.
      • file UserTable.hpp User-defined table (discrete y=f(x) function) options.
    • dir RNGTest Types, options, command line parsing, and grammar for RNGTest
      • dir CmdLine Command line parsing and grammar for RNGTest
        • file CmdLine.hpp RNGTest's command line.
        • file Grammar.hpp RNGTest's command line grammar definition.
        • file Parser.cpp RNGTest's command line parser.
        • file Parser.hpp RNGTest's command line parser.
      • dir InputDeck Input file parsing and grammar for RNGTest
        • file Grammar.hpp Random number generator test suite grammar definition.
        • file Parser.cpp Random number generator test suite input deck parser.
        • file Parser.hpp Random number generator test suite input deck parser.
        • file InputDeck.hpp Random number generator test suite input deck.
      • dir Options Options for RNGTest
        • file Battery.hpp Random number generator test suite batteries options.
      • file Types.hpp Types for RNGTest's parsers.
    • dir UnitTest Types, command line parsing, and grammar for UnitTest
      • dir CmdLine Command line parsing and grammar for UnitTest
        • file CmdLine.hpp UnitTest's command line.
        • file Grammar.hpp UnitTest's command line grammar definition.
        • file Parser.cpp UnitTest's command line parser.
        • file Parser.hpp UnitTest's command line parser.
      • file Types.hpp Types for UnitTest's parsers.
    • dir Walker Types, options, command line parsing, and grammar for Walker
      • dir CmdLine Command line parsing and grammar for Walker
        • file CmdLine.hpp Walker's command line.
        • file Grammar.hpp Walker's command line grammar definition.
        • file Parser.cpp Walker's command line parser.
        • file Parser.hpp Walker's command line parser.
      • dir InputDeck Input file parsing and grammar for Walker
        • file Grammar.hpp Walker's input deck grammar definition.
        • file Parser.cpp Walker's input deck file parser.
        • file Parser.hpp Walker's input deck file parser.
        • file InputDeck.hpp Walker's input deck.
      • dir Options Options for Walker
        • file CoeffPolicy.hpp Differential equation coefficients policy options.
        • file Depvar.hpp Dependent variable options for walker.
        • file DiffEq.hpp Differential equation options and associations for walker.
        • file HydroProductions.hpp Hydrodynamics production divided by dissipation rate options.
        • file HydroTimeScales.hpp Inverse hydrodynamics time scale options.
        • file InitPolicy.hpp Differential equation initialization policy options for walker.
        • file Normalization.hpp Normalization variants (used for MixDirichlet)
        • file VelocityVariant.hpp Velocity model variants.
      • file Types.hpp Types for Walker's parsers.
      • file Components.hpp Storage for number of components.
    • file CommonGrammar.hpp Generic, low-level grammar, re-used by specific grammars.
    • file FileParser.cpp File parser base class definition.
    • file FileParser.hpp File parser base class declaration.
    • file HelpFactory.hpp Command-line and input deck help factory.
    • file Keyword.hpp Generic definition of a keyword.
    • file Keywords.hpp Definition of all keywords.
    • file MKLGrammar.hpp Intel MKL-related grammar.
    • file Random123Grammar.hpp Random123-related grammar.
    • file RNGParam.hpp Types for storing parameters of random number generators.
    • file RNGSSEGrammar.hpp RNGSSE-related grammar.
    • file StatCtr.hpp Types and associated functions to deal with moments and PDFs.
    • file StringParser.cpp String parser base class definition.
    • file StringParser.hpp String parser base class declaration.
    • file SystemComponents.hpp Operations on numbers of scalar components of systems of equations.
    • file Tags.hpp Tags.
    • file Toggle.hpp Toggle is the base for an Option, doing generic searches.
  • dir DiffEq Stochastic and deterministic (ordinary) differential equations.
    • dir Beta Time integrators for stochastic differential equations based on the beta PDF.
      • file Beta.hpp System of beta SDEs.
      • file BetaCoeffPolicy.cpp Beta coefficients policies.
      • file BetaCoeffPolicy.hpp Beta coefficients policies.
      • file ConfigureBeta.cpp Register and compile configuration on the beta SDE.
      • file ConfigureBeta.hpp Register and compile configuration on the beta SDE.
      • file ConfigureMassFractionBeta.cpp Register and compile configuration on the mass fraction beta SDE.
      • file ConfigureMassFractionBeta.hpp Register and compile configuration on the number fraction beta SDE.
      • file ConfigureMixMassFractionBeta.cpp Register and compile configuration on the mix mass fraction beta SDE.
      • file ConfigureMixMassFractionBeta.hpp Register and compile configuration on the mix mass fraction beta SDE.
      • file ConfigureMixNumberFractionBeta.cpp Register and compile configuration on the mix number fraction beta SDE.
      • file ConfigureMixNumberFractionBeta.hpp Register and compile configuration on the mix number fraction beta SDE.
      • file ConfigureNumberFractionBeta.cpp Register and compile configuration on the number fraction beta SDE.
      • file ConfigureNumberFractionBeta.hpp Register and compile configuration on the number fraction beta SDE.
      • file MassFractionBeta.hpp System of mass-fraction beta SDEs.
      • file MassFractionBetaCoeffPolicy.cpp Mass-fraction beta SDE coefficients policies.
      • file MassFractionBetaCoeffPolicy.hpp Mass-fraction beta SDE coefficients policies.
      • file MixMassFractionBeta.hpp System of mix mass-fraction beta SDEs.
      • file MixMassFractionBetaCoeffPolicy.cpp Mass-fraction beta SDE coefficients policies.
      • file MixMassFractionBetaCoeffPolicy.hpp Mix mass-fraction beta SDE coefficients policies.
      • file MixNumberFractionBeta.hpp System of mix number-fraction beta SDEs.
      • file MixNumberFractionBetaCoeffPolicy.cpp Mass-fraction beta SDE coefficients policies.
      • file MixNumberFractionBetaCoeffPolicy.hpp Mix number-fraction beta SDE coefficients policies.
      • file NumberFractionBeta.hpp System of number-fraction beta SDEs.
      • file NumberFractionBetaCoeffPolicy.cpp Mass-fraction beta SDE coefficients policies.
      • file NumberFractionBetaCoeffPolicy.hpp Number-fraction beta SDE coefficients policies.
    • dir Dirichlet Time integrators for stochastic differential equations based on the Dirichlet PDF.
      • file ConfigureDirichlet.cpp Register and compile configuration on the Dirichlet SDE.
      • file ConfigureDirichlet.hpp Register and compile configuration on the Dirichlet SDE.
      • file ConfigureGeneralizedDirichlet.cpp Register and compile configuration on the generlized Dirichlet SDE.
      • file ConfigureGeneralizedDirichlet.hpp Register and compile configuration on the generalized Dirichlet SDE.
      • file ConfigureMixDirichlet.cpp Register and compile configuration on the MixDirichlet SDE.
      • file ConfigureMixDirichlet.hpp Register and compile configuration on the MixDirichlet SDE.
      • file Dirichlet.hpp Dirichlet SDE.
      • file DirichletCoeffPolicy.cpp Dirichlet coefficients policies.
      • file DirichletCoeffPolicy.hpp Dirichlet coefficients policies.
      • file GeneralizedDirichlet.hpp Lochner's generalized Dirichlet SDE.
      • file GeneralizedDirichletCoeffPolicy.cpp Generalized Dirichlet coefficients policies.
      • file GeneralizedDirichletCoeffPolicy.hpp Lochner's generalized Dirichlet coefficients policies.
      • file MixDirichlet.hpp Mixture Dirichlet SDE.
      • file MixDirichletCoeffPolicy.cpp Mixture Dirichlet coefficients policies.
      • file MixDirichletCoeffPolicy.hpp MixDirichlet coefficients policies.
    • dir Dissipation Time integrators for stochastic differential equations modeling the dissipation rate of turbulent kinetic energy in turbulent flows.
      • file ConfigureDissipation.cpp Register and compile configuration on the dissipation SDE.
      • file ConfigureDissipation.hpp Register and compile configuration on the dissipation SDE.
      • file Dissipation.hpp A dissipation model for Lagrangian particles.
      • file DissipationCoeffPolicy.cpp Dissipation SDE coefficients policies.
      • file DissipationCoeffPolicy.hpp Particle dissipation equation coefficients policies.
    • dir Gamma Time integrators for stochastic differential equations based on the gamma PDF.
      • file ConfigureGamma.cpp Register and compile configuration on the gamma SDE.
      • file ConfigureGamma.hpp Register and compile configuration on the gamma SDE.
      • file Gamma.hpp System of gamma SDEs.
      • file GammaCoeffPolicy.cpp Gamma coefficients policies.
      • file GammaCoeffPolicy.hpp Gamma coefficients policies.
    • dir OrnsteinUhlenbeck Time integrators for stochastic differential equations based on the Ornstein-Uhlenbeck process.
      • file ConfigureDiagOrnsteinUhlenbeck.cpp Register and compile configuration on the diagonal Ornstein-Uhlenbeck SDE.
      • file ConfigureDiagOrnsteinUhlenbeck.hpp Register and compile configuration on the diagonal Ornstein-Uhlenbeck SDE.
      • file ConfigureOrnsteinUhlenbeck.cpp Register and compile configuration on the Ornstein-Uhlenbeck SDE.
      • file ConfigureOrnsteinUhlenbeck.hpp Register and compile configuration on the Ornstein-Uhlenbeck SDE.
      • file DiagOrnsteinUhlenbeck.hpp System of diagonal Ornstein-Uhlenbeck SDEs.
      • file DiagOrnsteinUhlenbeckCoeffPolicy.cpp Ornstein-Uhlenbeck coefficients policies.
      • file DiagOrnsteinUhlenbeckCoeffPolicy.hpp Diagonal Ornstein-Uhlenbeck coefficients policies.
      • file OrnsteinUhlenbeck.hpp System of Ornstein-Uhlenbeck SDEs.
      • file OrnsteinUhlenbeckCoeffPolicy.cpp Ornstein-Uhlenbeck coefficients policies.
      • file OrnsteinUhlenbeckCoeffPolicy.hpp Ornstein-Uhlenbeck coefficients policies.
    • dir Position Time integrators for stochastic differential equations modeling the stochastic particle positions in turbulent flows.
      • file ConfigurePosition.cpp Register and compile configuration on the position SDE.
      • file ConfigurePosition.hpp Register and compile configuration on the position SDE.
      • file Position.hpp A position model for Lagrangian particles.
      • file PositionCoeffPolicy.cpp Position SDE coefficients policies.
      • file PositionCoeffPolicy.hpp Particle position equation coefficients policies.
    • dir SkewNormal Time integrators for stochastic differential equations based on the skew-normal PDF.
      • file ConfigureSkewNormal.cpp Register and compile configuration on the skew-normal SDE.
      • file ConfigureSkewNormal.hpp Register and compile configuration on the skew-normal SDE.
      • file SkewNormal.hpp System of skew-normal SDEs.
      • file SkewNormalCoeffPolicy.cpp SkewNormal coefficients policies.
      • file SkewNormalCoeffPolicy.hpp Skew-normal coefficients policies.
    • dir Velocity Time integrators for stochastic differential equations modeling the stochastic particle velocities in turbulent flows.
      • file ConfigureVelocity.cpp Register and compile configuration on the velocity SDE.
      • file ConfigureVelocity.hpp Register and compile configuration on the velocity SDE.
      • file Langevin.cpp Functionality implementing Langevin models for the velocity.
      • file Langevin.hpp Functionality implementing Langevin models for the velocity.
      • file Velocity.hpp A model for velocity in variable-density turbulence.
      • file VelocityCoeffPolicy.cpp Velocity coefficients policies.
      • file VelocityCoeffPolicy.hpp Velocity equation coefficients policies.
    • dir WrightFisher Time integrators for stochastic differential equations based on the Wright-Fisher process.
      • file ConfigureWrightFisher.cpp Register and compile configuration on the Wright-Fisher SDE.
      • file ConfigureWrightFisher.hpp Register and compile configuration on the Wright-Fisher SDE.
      • file WrightFisher.hpp Wright-Fisher SDE.
      • file WrightFisherCoeffPolicy.cpp Wright-Fisher coefficients policies.
      • file WrightFisherCoeffPolicy.hpp Wright-Fisher coefficients policies.
    • file DiffEq.hpp Differential equation.
    • file HydroProductions.hpp Hydrodynamics (turbulent kinetic energy) production divided by the dissipation rate from DNS for the homogeneous Rayleigh-Taylor instability.
    • file HydroTimeScales.hpp Inverse hydrodynamics time scales from DNS for the homogeneous Rayleigh-Taylor instability.
    • file InitPolicy.hpp Initialization policies.
    • file CoupledEq.hpp Functionality for querying information on coupled equations.
    • file DiffEqFactory.hpp Differential equations factory.
    • file DiffEqStack.cpp Stack of differential equations.
    • file DiffEqStack.hpp Stack of differential equations.
  • dir Inciter Functionality specific to Inciter
    • dir AMR Adaptive mesh refinement for Inciter
      • file Error.hpp Class for computing error estimates for mesh refinement.
      • file Error.cpp Class for computing error estimates for mesh refinement.
    • file Scheme.hpp Polymorphic glue for calling Charm++ entry methods to base class Discretization, its children implementing specific discretization schemes, and helper classes.
    • file ALE.cpp Definitions file for distributed ALE mesh motion.
    • file ALE.hpp Declarations file for distributed ALE mesh motion.
    • file ALECG.cpp ALECG for a PDE system with continuous Galerkin + ALE + RK.
    • file ALECG.hpp ALECG for a PDE system with continuous Galerkin + ALE + RK.
    • file DG.cpp DG advances a system of PDEs with the discontinuous Galerkin scheme.
    • file DG.hpp DG advances a system of PDEs with the discontinuous Galerkin scheme.
    • file DiagCG.cpp DiagCG for a PDE system with continuous Galerkin without a matrix.
    • file DiagCG.hpp DiagCG for a PDE system with continuous Galerkin without a matrix.
    • file Diagnostics.hpp Common data for collecting diagnostics.
    • file DiagReducer.cpp Custom Charm++ reducer for merging std::vectors across PEs.
    • file DiagReducer.hpp Custom Charm++ reducer for merging diagnostics across PEs.
    • file Discretization.cpp
    • file Discretization.hpp
    • file DistFCT.cpp Charm++ chare array for distributed flux-corrected transport.
    • file DistFCT.hpp Charm++ chare array for distributed flux-corrected transport.
    • file ElemDiagnostics.cpp ElemDiagnostics class for collecting element diagnostics.
    • file ElemDiagnostics.hpp ElemDiagnostics class for collecting diagnostics.
    • file FaceData.cpp
    • file FaceData.hpp
    • file FieldOutput.cpp Extract field output for inciter.
    • file FieldOutput.hpp Extract field output for inciter.
    • file FluxCorrector.cpp FluxCorrector performs limiting for transport equations.
    • file FluxCorrector.hpp FluxCorrector performs limiting for transport equations.
    • file History.hpp Types for collecting history output.
    • file NodeBC.cpp Boundary conditions for nodal discretizations.
    • file NodeBC.hpp Boundary conditions for nodal discretizations.
    • file NodeDiagnostics.cpp NodeDiagnostics class for collecting nodal diagnostics.
    • file NodeDiagnostics.hpp NodeDiagnostics class for collecting diagnostics.
    • file Partitioner.cpp Charm++ chare partitioner nodegroup used to perform mesh partitioning.
    • file Partitioner.hpp Charm++ chare partitioner nodegroup used to perform mesh partitioning.
    • file PUPAMR.cpp Charm++ Pack/UnPack utilities for AMR.
    • file PUPAMR.hpp Charm++ Pack/UnPack utilities for AMR.
    • file Refiner.cpp Mesh refiner for interfacing the mesh refinement library.
    • file Refiner.hpp Mesh refiner for interfacing the mesh refinement library.
    • file Sorter.cpp Mesh sorter for global distributed mesh reordering.
    • file Sorter.hpp Mesh sorter for global distributed mesh reordering.
    • file Transfer.hpp Types for solution transfer between solvers holding different meshes.
    • file Transporter.cpp Transporter drives the time integration of transport equations.
    • file Transporter.hpp Transporter drives the time integration of transport equations.
  • dir IO File input and output.
    • file ASCMeshReader.cpp ASC mesh reader class definition.
    • file ASCMeshReader.hpp ASC mesh reader class declaration.
    • file DiagWriter.cpp Text diagnostics writer declaration.
    • file DiagWriter.hpp Text diagnostics writer declaration.
    • file ExodusIIMeshReader.cpp ExodusII mesh reader.
    • file ExodusIIMeshReader.hpp ExodusII mesh reader.
    • file ExodusIIMeshWriter.cpp ExodusII mesh-based data writer.
    • file ExodusIIMeshWriter.hpp ExodusII mesh-based data writer.
    • file FileConvWriter.cpp Converter Writer Files.
    • file FileConvWriter.hpp Convert the input files to output file format
      
    • file GmshMeshIO.hpp Gmsh mesh reader and writer related types.
    • file GmshMeshReader.cpp Gmsh mesh reader class definition.
    • file GmshMeshReader.hpp Gmsh mesh reader class declaration.
    • file GmshMeshWriter.cpp Gmsh mesh writer class definition.
    • file GmshMeshWriter.hpp Gmsh mesh writer class declaration.
    • file H5PartWriter.cpp H5Part particles data writer.
    • file H5PartWriter.hpp H5Part particles data writer.
    • file HyperMeshReader.cpp Hyper mesh reader class definition.
    • file HyperMeshReader.hpp Hyper mesh reader class declaration.
    • file MeshDetect.cpp Unstructured mesh file format detection.
    • file MeshDetect.hpp Unstructured mesh file format detection.
    • file MeshFactory.cpp Unstructured mesh reader and writer factory.
    • file MeshFactory.hpp Unstructured mesh reader and writer factory.
    • file MeshReader.hpp Polymorphic mesh reader class for connecting to various readers.
    • file MeshWriter.cpp Charm++ group for outputing mesh data to file.
    • file MeshWriter.hpp Charm++ group for outputing mesh data to file.
    • file NetgenMeshReader.cpp Netgen mesh reader class definition.
    • file NetgenMeshReader.hpp Netgen mesh reader class declaration.
    • file NetgenMeshWriter.cpp Netgen mesh writer class definition.
    • file NetgenMeshWriter.hpp Netgen mesh writer class declaration.
    • file Omega_h_MeshReader.cpp Omega_h mesh reader.
    • file Omega_h_MeshReader.hpp Omega_h mesh reader.
    • file ParticleWriter.cpp Charm++ group for outputing particle data to file via H5Part.
    • file ParticleWriter.hpp Charm++ group for outputing particle data to file via H5Part.
    • file PDFWriter.cpp Univariate PDF writer.
    • file PDFWriter.hpp PDF writer class declaration.
    • file RDGFLOMeshReader.cpp RDGFLO mesh reader class declaration.
    • file RDGFLOMeshReader.hpp RDGFLO mesh reader class declaration.
    • file RootMeshWriter.cpp Root mesh-based data writer.
    • file RootMeshWriter.hpp Root mesh-based data writer.
    • file SiloWriter.cpp Silo writer definition.
    • file SiloWriter.hpp Silo writer declaration.
    • file STLTxtMeshReader.cpp ASCII STL (STereoLithography) reader class definition.
    • file STLTxtMeshReader.hpp ASCII STL (STereoLithography) reader class declaration.
    • file TxtStatWriter.cpp Text statistics writer declaration.
    • file TxtStatWriter.hpp Text statistics writer declaration.
    • file UGRIDMeshReader.cpp UGRID mesh reader class declaration.
    • file UGRIDMeshReader.hpp UGRID mesh reader class declaration.
  • dir LoadBalance Static load balancing
    • file LinearMap.cpp Advanced Charm++ array creation with a map in a linear fashion.
    • file LinearMap.hpp Advanced Charm++ array creation with a map in a linear fashion.
    • file UnsMeshMap.cpp Advanced Charm++ array creation with a map using an unstructured grid.
    • file UnsMeshMap.hpp Advanced Charm++ array creation with a map using an unstructured grid.
    • file ZoltanInterOp.cpp Interoperation with the Zoltan library.
    • file ZoltanInterOp.hpp Interoperation with the Zoltan library.
  • dir Main Driver routines for all executables.
    • file FileConv.cpp File converter Charm++ main chare.
    • file FileConvDriver.cpp File converter driver.
    • file FileConvDriver.hpp File converter driver.
    • file Inciter.cpp Inciter, computational shock hydrodynamics tool, Charm++ main chare.
    • file InciterDriver.cpp Inciter driver.
    • file InciterDriver.hpp Inciter driver.
    • file InciterPrint.cpp Inciter-specific pretty printer functionality.
    • file InciterPrint.hpp Inciter-specific pretty printer functionality.
    • file Init.cpp Common initialization routines for main() functions for multiple exectuables.
    • file Init.hpp Common initialization routines for main() functions for multiple exectuables.
    • file LBSwitch.cpp Charm++ chare group for switching on/off load balancing.
    • file LBSwitch.hpp Charm++ chare group for switching on/off load balancing.
    • file MeshConv.cpp Mesh file converter Charm++ main chare.
    • file MeshConvDriver.cpp Mesh converter driver.
    • file MeshConvDriver.hpp Mesh converter driver.
    • file RNGPrint.cpp Pretty printer base for pretty printers supporting RNGs.
    • file RNGPrint.hpp Pretty printer base for pretty printers supporting RNGs.
    • file RNGTest.cpp RNGTest's random number generator test suite's Charm++ main chare.
    • file RNGTestDriver.cpp Random number generator test suite driver.
    • file RNGTestDriver.hpp Random number generator test suite driver.
    • file RNGTestPrint.hpp RNGTest-specific pretty printer functionality.
    • file UnitTest.cpp UnitTest's Charm++ main chare and main().
    • file UnitTestDriver.cpp Unit test driver.
    • file UnitTestDriver.hpp Unit test driver.
    • file UnitTestPrint.hpp UnitTest's printer.
    • file Walker.cpp Random walker Charm++ main chare.
    • file WalkerDriver.cpp WalkerDriver that drives Walker.
    • file WalkerDriver.hpp WalkerDriver that drives Walker.
    • file WalkerPrint.cpp Walker-specific pretty printer functionality.
    • file WalkerPrint.hpp Walker-specific pretty printer functionality.
  • dir Mesh Functionality related to unstructured meshes and derived data structures.
    • file Around.hpp Helper class for iterating through linked lists of derived data.
    • file Centering.hpp Mesh solution location (centering)
    • file CommMap.cpp Functions employing communication maps.
    • file CommMap.hpp Type definitions for communication maps.
    • file DerivedData.cpp Generate data structures derived from unstructured mesh.
    • file DerivedData.hpp Generate data structures derived from unstructured mesh.
    • file Gradients.cpp Functions computing gradients on unstructured meshes for tetrahedra.
    • file Gradients.hpp Functions computing gradients on unstructured meshes for tetrahedra.
    • file Reorder.cpp Mesh reordering routines for unstructured meshes.
    • file Reorder.hpp Mesh reordering routines for unstructured meshes.
    • file STLMesh.cpp ASCII STL (STereoLithography) mesh class definition.
    • file STLMesh.hpp STL (STereoLithography) mesh class declaration.
    • file UnsMesh.hpp 3D unstructured mesh class declaration
  • dir NoWarning Include files turning on/off specific compiler warnings for third-party library includes.
    • file factory.hpp Include boost/functional/factory.hpp with turning off specific compiler warnings.
    • file ale.decl.h Include ale.decl.h with turning off specific compiler warnings.
    • file ale.def.h Include ale.def.h with turning off specific compiler warnings.
    • file alecg.decl.h Include alecg.decl.h with turning off specific compiler warnings.
    • file alecg.def.h Include alecg.def.h with turning off specific compiler warnings.
    • file any.hpp Include brigand/algorithms/any.hpp with turning off specific compiler warnings.
    • file append.hpp Include brigand/sequences/append.hpp with turning off specific compiler warnings.
    • file back.hpp Include brigand/sequences/back.hpp with turning off specific compiler warnings.
    • file backward.hpp Include backward.hpp with turning off specific compiler warnings.
    • file beta_distribution.hpp Include boost/random/beta_distribution.hpp with turning off specific compiler warnings.
    • file cgreceiver.decl.h Include cgreceiver.decl.h with turning off specific compiler warnings.
    • file cgreceiver.def.h Include cgreceiver.def.h with turning off specific compiler warnings.
    • file charestatecollector.decl.h Include charestatecollector.decl.h with turning off specific compiler warnings.
    • file charestatecollector.def.h Include charestatecollector.def.h with turning off specific compiler warnings.
    • file charm++.hpp Include charm++.h with turning off specific compiler warnings.
    • file charm.hpp Include charm.h with turning off specific compiler warnings.
    • file charmchild.def.h Include charmchild.def.h with turning off specific compiler warnings.
    • file charmtimer.def.h Include charmtimer.def.h with turning off specific compiler warnings.
    • file collector.def.h Include collector.def.h with turning off specific compiler warnings.
    • file conjugategradients.decl.h Include conjugategradients.decl.h with turning off specific compiler warnings.
    • file conjugategradients.def.h Include conjugategradients.def.h with turning off specific compiler warnings.
    • file dg.decl.h Include dg.decl.h with turning off specific compiler warnings.
    • file dg.def.h Include dg.def.h with turning off specific compiler warnings.
    • file diagcg.decl.h Include diagcg.decl.h with turning off specific compiler warnings.
    • file diagcg.def.h Include diagcg.def.h with turning off specific compiler warnings.
    • file discretization.decl.h Include discretization.decl.h with turning off specific compiler warnings.
    • file discretization.def.h Include discretization.def.h with turning off specific compiler warnings.
    • file distfct.decl.h Include distfct.decl.h with turning off specific compiler warnings.
    • file distfct.def.h Include distfct.def.h with turning off specific compiler warnings.
    • file distributor.decl.h Include distributor.decl.h with turning off specific compiler warnings.
    • file distributor.def.h Include distributor.def.h with turning off specific compiler warnings.
    • file exodusII.hpp Include exodusII.h with turning off specific compiler warnings.
    • file fileconv.decl.h Include fileconv.decl.h with turning off specific compiler warnings.
    • file fileconv.def.h Include fileconv.def.h with turning off specific compiler warnings.
    • file flatten.hpp Include brigand/algorithms/flatten.hpp with turning off specific compiler warnings.
    • file fold.hpp Include brigand/algorithms/fold.hpp with turning off specific compiler warnings.
    • file format.hpp Include boost/format.hpp with turning off specific compiler warnings.
    • file front.hpp Include brigand/sequences/front.hpp with turning off specific compiler warnings.
    • file H5Part.hpp Include H5Part.h with turning off specific compiler warnings.
    • file HYPRE_krylov.hpp Include HYPRE_krylov.h with turning off specific compiler warnings.
    • file HYPRE_parcsr_ls.hpp Include HYPRE_parcsr_ls.h with turning off specific compiler warnings.
    • file inciter.decl.h Include inciter.decl.h with turning off specific compiler warnings.
    • file inciter.def.h Include inciter.def.h with turning off specific compiler warnings.
    • file index_of.hpp Include brigand/algorithms/index_of.hpp with turning off specific compiler warnings.
    • file integrator.decl.h Include integrator.decl.h with turning off specific compiler warnings.
    • file integrator.def.h Include integrator.def.h with turning off specific compiler warnings.
    • file lbswitch.decl.h Include lbswitch.decl.h with turning off specific compiler warnings.
    • file lbswitch.def.h Include lbswitch.def.h with turning off specific compiler warnings.
    • file linearmap.decl.h Include linearmap.decl.h with turning off specific compiler warnings.
    • file linearmap.def.h Include linearmap.def.h with turning off specific compiler warnings.
    • file meshconv.decl.h Include meshconv.decl.h with turning off specific compiler warnings.
    • file meshconv.def.h Include meshconv.def.h with turning off specific compiler warnings.
    • file meshwriter.decl.h Include meshwriter.decl.h with turning off specific compiler warnings.
    • file meshwriter.def.h Include meshwriter.def.h with turning off specific compiler warnings.
    • file migrated_base.def.h Include migrated_base.def.h with turning off specific compiler warnings.
    • file migrated_inciter.decl.h Include migrated_inciter.decl.h with turning off specific compiler warnings.
    • file migrated_inciter.def.h Include migrated_inciter.def.h with turning off specific compiler warnings.
    • file mpi.hpp Include mpi.h with turning off specific compiler warnings.
    • file mpirunner.decl.h Include mpirunner.decl.h with turning off specific compiler warnings.
    • file mpirunner.def.h Include mpirunner.def.h with turning off specific compiler warnings.
    • file Omega_h_file.hpp Include Omega_h_file.hpp with turning off specific compiler warnings.
    • file particlewriter.decl.h Include particlewriter.decl.h with turning off specific compiler warnings.
    • file particlewriter.def.h Include particlewriter.def.h with turning off specific compiler warnings.
    • file partition.hpp Include brigand/algorithms/partition.hpp with turning off specific compiler warnings.
    • file partitioner.decl.h Include partitioner.decl.h with turning off specific compiler warnings.
    • file partitioner.def.h Include partitioner.def.h with turning off specific compiler warnings.
    • file pegtl.hpp Include pegtl/pegtl.hh with turning off specific compiler warnings.
    • file philox.hpp Include Random123/philox.h with turning off specific compiler warnings.
    • file pstream.hpp Include pstreams/pstream.h with turning off specific compiler warnings.
    • file pugixml.hpp Include pugixml.hpp with turning off specific compiler warnings.
    • file pup.hpp Include pup.h with turning off specific compiler warnings.
    • file pup_stl.hpp Include pup_stl.h with turning off specific compiler warnings.
    • file quietcerr.decl.h Include quietcerr.decl.h with turning off specific compiler warnings.
    • file quietcerr.def.h Include quietcerr.def.h with turning off specific compiler warnings.
    • file refiner.decl.h Include refiner.decl.h with turning off specific compiler warnings.
    • file refiner.def.h Include refiner.def.h with turning off specific compiler warnings.
    • file rngtest.decl.h Include rngtest.decl.h with turning off specific compiler warnings.
    • file rngtest.def.h Include rngtest.def.h with turning off specific compiler warnings.
    • file set.hpp Include brigand/sequences/set.hpp with turning off specific compiler warnings.
    • file sip_hash.hpp Include highwayhash/sip_hash.hpp with turning off specific compiler warnings.
    • file sol.hpp Include sol/sol.hpp with turning off specific compiler warnings.
    • file sorter.decl.h Include sorter.decl.h with turning off specific compiler warnings.
    • file sorter.def.h Include sorter.def.h with turning off specific compiler warnings.
    • file testarray.decl.h Include testarray.decl.h with turning off specific compiler warnings.
    • file testarray.def.h Include testarray.def.h with turning off specific compiler warnings.
    • file testu01.decl.h Include testu01.decl.h with turning off specific compiler warnings.
    • file testu01.def.h Include testu01.def.h with turning off specific compiler warnings.
    • file testu01suite.decl.h Include testu01suite.decl.h with turning off specific compiler warnings.
    • file testu01suite.def.h Include testu01suite.def.h with turning off specific compiler warnings.
    • file TFile.hpp Include Root's TFile.h with turning off specific compiler warnings.
    • file TGraph2D.hpp Include Root's TGraph2D.h with turning off specific compiler warnings.
    • file threefry.hpp Include Random123/threefry.h with turning off specific compiler warnings.
    • file transform.hpp Include brigand/algorithms/transform.hpp with turning off specific compiler warnings.
    • file transporter.decl.h Include transporter.decl.h with turning off specific compiler warnings.
    • file transporter.def.h Include transporter.def.h with turning off specific compiler warnings.
    • file TString.hpp Include Root's TString.h with turning off specific compiler warnings.
    • file TTree.hpp Include Root's TTree.h with turning off specific compiler warnings.
    • file tut.hpp Include tut/tut.hpp with turning off specific compiler warnings.
    • file tut_result.hpp Include tut/tut_result.hpp with turning off specific compiler warnings.
    • file tut_runner.hpp Include tut/tut_runner.hpp with turning off specific compiler warnings.
    • file tutsuite.decl.h Include tutsuite.decl.h with turning off specific compiler warnings.
    • file tutsuite.def.h Include tutsuite.def.h with turning off specific compiler warnings.
    • file tuttest.decl.h Include tuttest.decl.h with turning off specific compiler warnings.
    • file tuttest.def.h Include tuttest.def.h with turning off specific compiler warnings.
    • file uniform.hpp Include Random123/uniform.hpp with turning off specific compiler warnings.
    • file unittest.decl.h Include unittest.decl.h with turning off specific compiler warnings.
    • file unittest.def.h Include unittest.def.h with turning off specific compiler warnings.
    • file unsmeshmap.decl.h Include unsmeshmap.decl.h with turning off specific compiler warnings.
    • file unsmeshmap.def.h Include unsmeshmap.def.h with turning off specific compiler warnings.
    • file value_factory.hpp Include boost/functional/value_factory.hpp with turning off specific compiler warnings.
    • file walker.decl.h Include walker.decl.h with turning off specific compiler warnings.
    • file walker.def.h Include walker.def.h with turning off specific compiler warnings.
    • file Zoltan2_PartitioningProblem.hpp Include Zoltan2_PartitioningProblem.hpp with turning off specific compiler warnings.
  • dir Particles Functionality related spatial transport of Lagrangian particles.
    • file Tracker.cpp Tracker tracks Lagrangian particles in physical space.
    • file Tracker.hpp Tracker tracks Lagrangian particles in physical space.
  • dir PDE Partial differential equations.
    • dir CompFlow Partial differential equations for compressible flow.
      • dir Physics Physics configurations for compressible flow.
        • file DG.hpp Physics configurations for compressible flow using discontinuous Galerkin finite element methods.
        • file CG.hpp Physics configurations for compressible single-material flow using continuous Galerkin discretization.
        • file CGEuler.hpp Physics policy for the Euler equation using continuous Galerkin.
        • file CGNavierStokes.cpp Physics policy for the Navier-Stokes equation using continuous Galerkin discretization.
        • file CGNavierStokes.hpp Physics policy for the Navier-Stokes equation using continuous Galerkin.
        • file DGEuler.hpp Physics policy for the Euler equation governing single-material flow using a discontinuous Galerkin finite element method.
      • dir Problem Problem configurations for compressible flow.
        • file FieldOutput.cpp Field outputs for single-material equation solver.
        • file FieldOutput.hpp Field outputs for single-material equation solver.
        • file BoxInitialization.cpp User-defined box initialization.
        • file BoxInitialization.hpp User-defined box initialization.
        • file GaussHumpCompflow.cpp Problem configuration for the compressible flow equations.
        • file GaussHumpCompflow.hpp Problem configuration for the compressible flow equations.
        • file NLEnergyGrowth.cpp Problem configuration for the compressible flow equations.
        • file NLEnergyGrowth.hpp Problem configuration for the compressible flow equations.
        • file RayleighTaylor.cpp Problem configuration for the compressible flow equations.
        • file RayleighTaylor.hpp Problem configuration for the compressible flow equations.
        • file RotatedSodShocktube.cpp Problem configuration for the compressible flow equations.
        • file RotatedSodShocktube.hpp Problem configuration for rotated Sod's shock-tube.
        • file SedovBlastwave.cpp Problem configuration for the compressible flow equations.
        • file SedovBlastwave.hpp Problem configuration for Sedov's blastwave.
        • file SheddingFlow.cpp Problem configuration for the compressible flow equations.
        • file SheddingFlow.hpp Problem configuration for shedding flow over triangular wedge.
        • file SodShocktube.cpp Problem configuration for the compressible flow equations.
        • file SodShocktube.hpp Problem configuration for Sod's shock-tube.
        • file TaylorGreen.cpp Problem configuration for the compressible flow equations.
        • file TaylorGreen.hpp Problem configuration for the compressible flow equations.
        • file UserDefined.cpp Problem configuration for the compressible flow equations.
        • file UserDefined.hpp Problem configuration for the compressible flow equations.
        • file VorticalFlow.cpp Problem configuration for the compressible flow equations.
        • file VorticalFlow.hpp Problem configuration for the single-material compressible flow equations.
      • file Problem.hpp All problem configurations for the compressible flow equations.
      • file CGCompFlow.hpp Compressible single-material flow using continuous Galerkin.
      • file DGCompFlow.hpp Compressible single-material flow using discontinuous Galerkin finite elements.
      • file RiemannFactory.cpp Register available Riemann solvers for single material compressible hydrodynamics into a factory.
      • file RiemannFactory.hpp Register available Riemann solvers for single material compressible hydrodynamics into a factory.
    • dir Integrate Integrals of various PDE operators used in discontinuous Galerkin methods.
      • file Basis.cpp Functions for computing the Dubiner basis functions in DG methods.
      • file Basis.hpp Functions for computing the Dubiner basis functions in DG methods.
      • file Boundary.cpp Functions for computing physical boundary surface integrals of a system of PDEs in DG methods.
      • file Boundary.hpp Functions for computing physical boundary surface integrals of a system of PDEs in DG methods.
      • file Initialize.cpp Functions for initialization of system of PDEs in DG methods.
      • file Initialize.hpp Functions for initialization of system of PDEs in DG methods.
      • file Mass.cpp Functions for computing the mass matrix for a system of PDEs.
      • file Mass.hpp Functions for computing the mass matrix for a system of PDEs.
      • file MultiMatTerms.cpp Functions for computing volume integrals of multi-material terms using DG methods.
      • file MultiMatTerms.hpp Functions for computing volume integrals of multi-material terms using DG methods.
      • file Quadrature.cpp Quadrature coordinates and weights for numerical integration.
      • file Quadrature.hpp Quadrature coordinates and weights for numerical integration.
      • file Source.cpp Functions for computing integrals of an arbitrary source term of a for single-material compressible flow, CompFlow using DG methods.
      • file Source.hpp Functions for computing integrals of an arbitrary source term of a for single-material compressible flow, CompFlow using DG methods.
      • file Surface.cpp Functions for computing internal surface integrals of a system of PDEs in DG methods.
      • file Surface.hpp Functions for computing internal surface integrals of a system of PDEs in DG methods.
      • file Volume.cpp Functions for computing volume integrals for a system of PDEs in DG methods.
      • file Volume.hpp Functions for computing volume integrals for a system of PDEs in DG methods.
    • dir MultiMat Partial differential equations for compressible multi-material flow.
      • dir Physics Physics configurations for compressible multi-material flow.
        • file DG.hpp Physics configurations for multi-material compressible flow using discontinuous Galerkin finite element methods.
        • file DGVelEq.hpp Physics policy for the Euler equation governing multi-material flow using a finite volume method.
      • dir Problem Problem configurations for compressible multi-material flow.
        • file FieldOutput.cpp Field outputs for multi-material equation solver.
        • file FieldOutput.hpp Field outputs for multi-material equation solver.
        • file BoxInitialization.cpp User-defined box initialization.
        • file BoxInitialization.hpp User-defined box initialization.
        • file SodShocktube.cpp Problem configuration for the compressible flow equations.
        • file SodShocktube.hpp Problem configuration for Sod's shock-tube.
        • file UserDefined.cpp Problem configuration for the compressible flow equations.
        • file UserDefined.hpp Problem configuration for the multi-material compressible flow equations.
        • file InterfaceAdvection.cpp Problem configuration for the compressible flow equations.
        • file InterfaceAdvection.hpp Problem configuration for the multi-material compressible flow equations.
        • file ShockHeBubble.cpp Problem configuration for the multi-material flow equations.
        • file ShockHeBubble.hpp Problem configuration for gas impact.
        • file UnderwaterEx.cpp Problem configuration for the multi-material flow equations.
        • file UnderwaterEx.hpp Problem configuration for underwater explosion.
        • file WaterAirShocktube.cpp Problem configuration for the multi-material flow equations.
        • file WaterAirShocktube.hpp Problem configuration for Water-Air shock-tube.
      • file Problem.hpp All problem configurations for the compressible flow equations.
      • file RiemannFactory.cpp Register available Riemann solvers for multimaterial compressible hydrodynamics into a factory.
      • file RiemannFactory.hpp Register available Riemann solvers for multimaterial compressible hydrodynamics into a factory.
      • file DGMultiMat.hpp Compressible multi-material flow using discontinuous Galerkin finite elements.
      • file MultiMatIndexing.hpp Multi-material system indexing functions.
    • dir Riemann Approximate Riemann solvers.
      • file AUSM.hpp Advection Upstream Splitting Method (AUSM+) Riemann flux function.
      • file HLL.hpp Harten-Lax-vanLeer's (HLL) Riemann flux function.
      • file HLLC.hpp Harten-Lax-van Leer-Contact (HLLC) Riemann flux function.
      • file LaxFriedrichs.hpp Lax-Friedrichs Riemann flux function.
      • file RiemannSolver.hpp Riemann solver interface class for various Riemann solvers.
      • file Rusanov.hpp Rusanov Riemann flux function.
      • file Upwind.hpp Upwind Riemann flux function.
    • dir Transport Partial differential equations for scalar transport.
      • dir Physics Physics configurations for scalar transport.
        • file DG.hpp Physics configurations for scalar transport using discontinuous Galerkin.
        • file CG.hpp Physics configurations for scalar transport using continuous Galerkin.
        • file CGAdvDiff.cpp Physics policy for the transport equations using continuous Galerkin (CG)
        • file CGAdvDiff.hpp Physics policy for advection-diffusion using continuous Galerkin.
        • file CGAdvection.hpp Physics policy for advection using continuous Galerkin (no-op)
        • file DGAdvection.hpp Physics policy for advection using continuous Galerkin (no-op)
      • dir Problem Problem configurations for scalar transport.
        • file CylAdvect.cpp Problem configuration for transport equations.
        • file CylAdvect.hpp Problem configuration for transport equations.
        • file CylVortex.cpp Problem configuration for transport equations.
        • file CylVortex.hpp Problem configuration for transport equations.
        • file GaussHump.cpp Problem configuration for transport equations.
        • file GaussHump.hpp Problem configuration for transport equations.
        • file ShearDiff.cpp Problem configuration for transport equations.
        • file ShearDiff.hpp Problem configuration for scalar transport equations.
        • file SlotCyl.cpp Problem configuration for transport equations.
        • file SlotCyl.hpp Problem configuration for transport equations.
      • file Problem.hpp All problem configurations for the scalar transport equations.
      • file CGTransport.hpp Scalar transport using continous Galerkin discretization.
      • file DGTransport.hpp Scalar transport using disccontinous Galerkin discretization.
    • file Limiter.hpp Limiters for discontiunous Galerkin methods.
    • file CGPDE.cpp Functions common to ALECG.
    • file CGPDE.hpp Partial differential equation base for continuous Galerkin PDEs.
    • file ConfigureCompFlow.cpp Register and compile configuration for compressible flow PDE.
    • file ConfigureCompFlow.hpp Register and compile configuration for compressible flow PDE.
    • file ConfigureMultiMat.cpp Register and compile configuration for multi-material compressible flow PDE.
    • file ConfigureMultiMat.hpp Register and compile configuration for multi-material compressible flow PDE.
    • file ConfigureOutVar.cpp Assign functions to compute output variables from the numerical solution.
    • file ConfigureOutVar.hpp Assign functions to compute output variables from the numerical solution.
    • file ConfigureTransport.cpp Register and compile configuration on the transport PDE.
    • file ConfigureTransport.hpp Register and compile configuration on the Transport PDE.
    • file DGPDE.cpp Functions common to discontinuous Galerkin PDE types.
    • file DGPDE.hpp Partial differential equation base for discontinuous Galerkin PDEs.
    • file FunctionPrototypes.hpp Function prototypes used in PDE classes.
    • file InfoMesh.hpp Assemble info on the configuration of solver coupling.
    • file Limiter.cpp Limiters for discontiunous Galerkin methods.
    • file PDEFactory.hpp Differential equations factory.
    • file PDEStack.cpp Stack of partial differential equations.
    • file PDEStack.hpp Stack of differential equations.
    • file PrefIndicator.cpp Adaptive indicators for p-adaptive discontiunous Galerkin methods.
    • file Reconstruction.cpp Reconstruction for reconstructed discontinuous Galerkin methods.
    • file Reconstruction.hpp Reconstruction for reconstructed Galerkin methods.
  • dir RNG Interoperation with random number generator libraries.
    • file RNG.hpp Random number generator.
    • file MKLRNG.hpp Interface to Intel MKL VSL random number generators.
    • file Random123.hpp Interface to Random123 random number generators.
    • file RNGSSE.hpp Interface to RNGSSE random number generators.
    • file RNGStack.cpp Stack of random number generators.
    • file RNGStack.hpp Stack of random number generators.
  • dir RNGTest Functionality specific to RNGTest
    • file Battery.hpp Random number generator test harness.
    • file BigCrush.cpp Class re-creating the TestU01 library's BigCrush battery.
    • file BigCrush.hpp Class re-creating the TestU01 library's BigCrush battery.
    • file Crush.cpp Class re-creating the TestU01 library's Crush battery.
    • file Crush.hpp Class re-creating the TestU01 library's Crush battery.
    • file SmallCrush.cpp Class re-creating the TestU01 library's SmallCrush battery.
    • file SmallCrush.hpp Class re-creating the TestU01 library's SmallCrush battery.
    • file StatTest.hpp Random number generator statistical test.
    • file TestStack.hpp Stack collecting all types of random number generator statistical tests.
    • file TestU01.cpp TestU01 statistical test.
    • file TestU01.hpp TestU01 statistical test.
    • file TestU01Props.hpp TestU01 statistical test properties class.
    • file TestU01Stack.cpp Stack of TestU01 RNG statistical tests.
    • file TestU01Stack.hpp Stack of TestU01 RNG statistical tests.
    • file TestU01Suite.cpp TestU01 random number generator test suite.
    • file TestU01Suite.hpp TestU01 random number generator test suite.
    • file TestU01Util.hpp Interfacing the TestU01 random number generator test suite.
    • file TestU01Wrappers.hpp TestU01 global-scope wrappers.
  • dir Statistics Estimating statistical moments and probablity distributions from ensembles.
    • file BiPDF.hpp Joint bivariate PDF estimator.
    • file PDFReducer.cpp Custom Charm++ reducer for merging PDFs across PEs.
    • file PDFReducer.hpp Custom Charm++ reducer for merging PDFs across PEs.
    • file Statistics.cpp Statistics class definition.
    • file Statistics.hpp Statistics class declaration.
    • file TriPDF.hpp Joint trivariate PDF estimator.
    • file UniPDF.hpp Univariate PDF estimator.
  • dir UnitTest Functionality specific to UnitTest
    • file Assessment.cpp Unit test suite assessment.
    • file Assessment.hpp Unit test suite assessment.
    • file MPIRunner.cpp Charm++ nodegroup to run MPI unit tests.
    • file MPIRunner.hpp Charm++ nodegroup to run MPI unit tests.
    • file QuietCerr.cpp Charm++ nodegroup to quiet std::cerr in a thread-safe fashion.
    • file QuietCerr.hpp Charm++ nodegroup to quiet std::cerr in a thread-safe fashion.
    • file TestArray.hpp Simple test Charm++ array for testing arrays.
    • file TUTConfig.hpp Template Unit Test unit test configuration for all tests.
    • file TUTSuite.cpp Template Unit Test suite class definition.
    • file TUTSuite.hpp Template Unit Test suite class declaration.
    • file TUTTest.cpp Template Unit Test unit test class definition.
    • file TUTTest.hpp Template Unit Test unit test class declaration.
    • file TUTUtil.hpp Utilities for unit testing with the Template Unit Test library.
  • dir Walker Functionality specific to Walker
    • file Collector.cpp Charm++ module interface file for collecting contributions from Integrators.
    • file Collector.hpp Charm++ module interface file for collecting contributions from Integrators.
    • file Distributor.cpp Distributor drives the time integration of differential equations.
    • file Distributor.hpp Distributor drives the time integration of differential equations.
    • file Integrator.cpp Integrator advances differential equations.
    • file Integrator.hpp Integrator advances differential equations.