Examples » Inciter: Integrating the scalar advection equation for a smooth problem

This example runs Inciter to integrate the advection equation (see, e.g., PDE/Transport/CGTransport.h) configured to solve only the smooth portion of Zalesak's slotted cylinder (inciter::TransportProblemSlotCyl) problem.

This example slightly differs from Inciter: Integrating the scalar advection equation for a non-smooth problem, in that the non-smooth regions are commented out. This can be used to estimate the order of converge of the spatial and teporal discretization for smooth problems.

The following modification, applied in PDE/Transport/Problem/SlotCyl.h, removes the non-smooth part of the solution from the slotted cylinder case:

class TransportProblemSlotCyl {

  private:
    using ncomp_t = tk::ctr::ncomp_type;

  public:
    //! Evaluate analytical solution at (x,y,t) for all components
    //! \param[in] ncomp Number of components in this transport equation system
    //! \param[in] x X coordinate where to evaluate the solution
    //! \param[in] y Y coordinate where to evaluate the solution
    //! \param[in] t Time where to evaluate the solution
    //! \return Values of all components evaluated at (x,y,t)
    static std::vector< tk::real >
    solution( ncomp_t, ncomp_t ncomp,
              tk::real x, tk::real y, tk::real, tk::real t )
    {
      using std::sin; using std::cos;
      std::vector< tk::real > s( ncomp, 0.0 );
      for (ncomp_t c=0; c<ncomp; ++c) {
        auto T = t + 2.0*M_PI/ncomp * c;
        const tk::real R0 = 0.15;
        // center of the cone
        tk::real x0 = 0.5;
        tk::real y0 = 0.25;
        tk::real r = std::sqrt((x0-0.5)*(x0-0.5) + (y0-0.5)*(y0-0.5));
        tk::real kx = 0.5 + r*sin( T );
        tk::real ky = 0.5 - r*cos( T );
        // center of the hump
        x0 = 0.25;
        y0 = 0.5;
        r = std::sqrt((x0-0.5)*(x0-0.5) + (y0-0.5)*(y0-0.5));
        tk::real hx = 0.5 + r*sin( T-M_PI/2.0 ),
                 hy = 0.5 - r*cos( T-M_PI/2.0 );
        // center of the slotted cylinder
        x0 = 0.5;
        y0 = 0.75;
        r = std::sqrt((x0-0.5)*(x0-0.5) + (y0-0.5)*(y0-0.5));
        tk::real cx = 0.5 + r*sin( T+M_PI ),
                 cy = 0.5 - r*cos( T+M_PI );
        // end points of the cylinder slot
        tk::real i1x = 0.525, i1y = cy - r*cos( std::asin(0.025/r) ),
                 i2x = 0.525, i2y = 0.8,
                 i3x = 0.475, i3y = 0.8;
        // rotate end points of cylinder slot
        tk::real ri1x = 0.5 + cos(T)*(i1x-0.5) - sin(T)*(i1y-0.5),
                 ri1y = 0.5 + sin(T)*(i1x-0.5) + cos(T)*(i1y-0.5),
                 ri2x = 0.5 + cos(T)*(i2x-0.5) - sin(T)*(i2y-0.5),
                 ri2y = 0.5 + sin(T)*(i2x-0.5) + cos(T)*(i2y-0.5),
                 ri3x = 0.5 + cos(T)*(i3x-0.5) - sin(T)*(i3y-0.5),
                 ri3y = 0.5 + sin(T)*(i3x-0.5) + cos(T)*(i3y-0.5);
        // direction of slot sides
        tk::real v1x = ri2x-ri1x, v1y = ri2y-ri1y,
                 v2x = ri3x-ri2x, v2y = ri3y-ri2y;
        // lengths of direction of slot sides vectors
        tk::real v1 = std::sqrt(v1x*v1x + v1y*v1y),
                 v2 = std::sqrt(v2x*v2x + v2y*v2y);
        // cone
//         r = std::sqrt((x-kx)*(x-kx) + (y-ky)*(y-ky)) / R0;
//         if (r<1.0) s[c] = 0.6*(1.0-r);
        // hump
        r = std::sqrt((x-hx)*(x-hx) + (y-hy)*(y-hy)) / R0;
        if (r<1.0) s[c] = 0.2*(1.0+cos(M_PI*std::min(r,1.0)));
        // cylinder
//         r = std::sqrt((x-cx)*(x-cx) + (y-cy)*(y-cy)) / R0;
//         const std::array< tk::real, 2 > r1{{ v1x, v1y }},
//                                         r2{{ x-ri1x, y-ri1y }};
//         const auto d1 = (r1[0]*r2[1] - r2[0]*r1[1]) / v1;
//         const std::array< tk::real, 2 > r3{{ v2x, v2y }},
//                                         r4{{ x-ri2x, y-ri2y }};
//         const auto d2 = (r3[0]*r4[1] - r4[0]*r3[1]) / v2;
//         if (r<1.0 && (d1>0.05 || d1<0.0 || d2<0.0)) s[c] = 0.6;
      }
      return s;
    }
  ...
}

Control file

The control file is the same as that of the slotted cylinder problem, see also inciter_exampl_slot_cyl.

# vim: filetype=sh:
# This is a comment
# Keywords are case-sensitive

title "Zalesak's slotted cylinder"

inciter

  #nstep 10  # Max number of time steps
  #term 6.28318530718  # Max time = 2*pi
  term 1.57079632679  # Max time = pi/2
  #term 0.78539816339  # Max time = pi/4
  #term 0.39270  # Max time = pi/8
  cfl  0.5
  ttyi 10      # TTY output interval
  ctau 1.0  # FCT mass diffusivity

  transport
    physics advection
    problem slot_cyl
    ncomp 1
  end

  plotvar
    interval 100
  end

end

Output for three runs (750K, 6M, and 48M)

$ ./charmrun +p36 Main/inciter -v -c slot_cyl.q -i unitcube_01_750K.exo

Running on 36 processors:  Main/inciter -v -c slot_cyl.q -i unitcube_01_750K.exo
charmrun>  /usr/bin/setarch x86_64 -R  mpirun -np 36  Main/inciter -v -c slot_cyl.q -i unitcube_01_750K.exo
Charm++> Running on MPI version: 3.1
Charm++> level of thread support used: MPI_THREAD_SINGLE (desired: MPI_THREAD_SINGLE)
Charm++> Running in non-SMP mode: numPes 36
Converse/Charm++ Commit ID:
CharmLB> Load balancer assumes all CPUs are same.
Charm++> Running on 1 unique compute nodes (36-way SMP).
Charm++> cpu topology info is gathered in 0.014 seconds.

      ,::,`                                                            `.
   .;;;'';;;:                                                          ;;#
  ;;;@+   +;;;  ;;;;;,   ;;;;. ;;;;;, ;;;;      ;;;;   `;;;;;;:        ;;;
 :;;@`     :;;' .;;;@,    ,;@, ,;;;@: .;;;'     .;+;. ;;;@#:';;;      ;;;;'
 ;;;#       ;;;: ;;;'      ;:   ;;;'   ;;;;;     ;#  ;;;@     ;;;     ;+;;'
.;;+        ;;;# ;;;'      ;:   ;;;'   ;#;;;`    ;#  ;;@      `;;+   .;#;;;.
;;;#        :;;' ;;;'      ;:   ;;;'   ;# ;;;    ;# ;;;@       ;;;   ;# ;;;+
;;;#        .;;; ;;;'      ;:   ;;;'   ;# ,;;;   ;# ;;;#       ;;;:  ;@  ;;;
;;;#        .;;' ;;;'      ;:   ;;;'   ;#  ;;;;  ;# ;;;'       ;;;+ ;',  ;;;@
;;;+        ,;;+ ;;;'      ;:   ;;;'   ;#   ;;;' ;# ;;;'       ;;;' ;':::;;;;
`;;;        ;;;@ ;;;'      ;:   ;;;'   ;#    ;;;';# ;;;@       ;;;:,;+++++;;;'
 ;;;;       ;;;@ ;;;#     .;.   ;;;'   ;#     ;;;;# `;;+       ;;# ;#     ;;;'
 .;;;      :;;@  ,;;+     ;+    ;;;'   ;#      ;;;#  ;;;      ;;;@ ;@      ;;;.
  ';;;    ;;;@,   ;;;;``.;;@    ;;;'   ;+      .;;#   ;;;    :;;@ ;;;      ;;;+
   :;;;;;;;+@`     ';;;;;'@    ;;;;;, ;;;;      ;;+    +;;;;;;#@ ;;;;.   .;;;;;;
     .;;#@'         `#@@@:     ;::::; ;::::      ;@      '@@@+   ;:::;    ;::::::
    :;;;;;;.     .___              .__  __
   .;@+@';;;;;;' |   | ____   ____ |__|/  |_  ___________
    `     '#''@` |   |/    \_/ ___\|  \   __\/ __ \_  __ \
                 |   |   |  \  \___|  ||  | \  ___/|  | \/
                 |___|___|  /\___  >__||__|  \___  >__|
                          \/     \/              \/

                                 < ENVIRONMENT >
                                 ------ o ------

 * Build environment:
 --------------------
     Hostname                       : lagrange
     Executable                     : inciter
     Version                        : 0.1 (C16015)
     Revision SHA1                  : Quinoa_v0.1-914-g40abfa98
     CMake build type               : RELEASE
     Asserts                        : off (turn on: CMAKE_BUILD_TYPE=DEBUG)
     Exception trace                : off (turn on: CMAKE_BUILD_TYPE=DEBUG)
     MPI C++ wrapper                : /usr/bin/mpicxx
     Underlying C++ compiler        : /usr/bin/g++
     Build date                     : Sun Jun  4 13:51:45 MDT 2017

 * Run-time environment:
 -----------------------
     Date, time                     : Mon Jun  5 07:07:37 2017
     Work directory                 : /home/jbakosi/code/quinoa/build/gnu
     Executable (rel. to work dir)  : Main/inciter
     Command line arguments         : '-v -c slot_cyl.q -i unitcube_01_750K.exo'
     Output                         : verbose (quiet: omit -v)
     Control file                   : slot_cyl.q
     Parsed control file            : success


                                   < FACTORY >
                                   ---- o ----

 * Unknowns data layout (CMake: FIELD_DATA_LAYOUT):
 --------------------------------------------------
     unknown-major

 * Registered partial differential equations:
 --------------------------------------------
     Unique equation types          : 2
     With all policy combinations   : 12

     Legend: equation name : supported policies

     Policy codes:
      * h: physics configuration:
        A - Advection
        D - Advection + diffusion
        L - Laplace
        N - Navier-Stokes
        E - Euler
      * r: problem:
        U - User-defined
        S - Shear-diffusion
        D - Dirichlet & Neumann
        V - Vortical flow
        V - Nonlinear energy growth
        V - Rayleigh-Taylor
        Z - Zalesak's slotted cylinder

     Compressible flow              : h:EN, r:UV
     Transport                      : h:AD, r:SZ


                                   < PROBLEM >
                                   ---- o ----

 * Title: Zalesak's slotted cylinder
 -----------------------------------

 * Partial differential equations integrated (1):
 ------------------------------------------------
   < Transport >
     problem                        : Zalesak's slotted cylinder
     start offset in unknowns array : 0
     number of components           : 1

 * Discretization parameters:
 ----------------------------
     Number of time steps           : 18446744073709551615
     Start time                     : 0
     Terminate time                 : 1.5708
     CFL coefficient                : 0.5
     Mass diffusion coeff           : 1

 * Output filenames:
 -------------------
     Field                          : out.<chareid>
     Diagnostics                    : diag

 * Output intervals:
 -------------------
     TTY                            : 1
     Field                          : 10
     Diagnostics                    : 1

Quinoa> Reading side sets ... done
Quinoa> Creating linear system mergers
Quinoa> Creating particle writers
Quinoa> Creating partitioners and reading mesh graph ... done

 * Input mesh graph statistics:
 ------------------------------
     Number of tetrahedra           : 750000
     Number of nodes                : 132651

 * Load distribution:
 --------------------
     Virtualization [0.0...1.0]     : 0
     Load (number of tetrahedra)    : 750000
     Number of processing elements  : 36
     Number of work units           : 36 (35*20833+20845)

 * Initial mesh partitioning:
 ----------------------------
     Mesh partitioning algorithm    : recursive coordinate bisection

Quinoa> Mesh read time: 0.021658 sec
Quinoa> Partitioning and distributing mesh ... ZOLTAN Load balancing method = 3 (RCB)
Build configuration:

  ZOLTAN_ID_TYPE: unsigned int (4 bytes)
  ZOLTAN_GNO_TYPE: ssize_t, (8 bytes)
  MPI_Datatype for ZOLTAN_ID_TYPE: MPI_UNSIGNED
  MPI_Datatype for ZOLTAN_GNO_TYPE: MPI_LONG

ZOLTAN Parameter IMBALANCE_TOL[0] = 1.100000
ZOLTAN Parameter AUTO_MIGRATE = FALSE
ZOLTAN Parameter MIGRATE_ONLY_PROC_CHANGES = 1
ZOLTAN Parameter OBJ_WEIGHT_DIM = 0
ZOLTAN Parameter EDGE_WEIGHT_DIM = 0
ZOLTAN Parameter DEBUG_LEVEL = 1
ZOLTAN Parameter DEBUG_PROCESSOR = 0
ZOLTAN Parameter DETERMINISTIC = TRUE
ZOLTAN Parameter TIMER = 1 (wall)
ZOLTAN Parameter NUM_GID_ENTRIES = 2
ZOLTAN Parameter NUM_LID_ENTRIES = 2
ZOLTAN Parameter RETURN_LISTS = PARTITION ASSIGNMENTS
ZOLTAN Parameter NUM_GLOBAL_PARTS = 36
ZOLTAN Parameter NUM_LOCAL_PARTS = -1
ZOLTAN Parameter REMAP = 1
ZOLTAN Parameter SEED = 123456789 (123456789)
ZOLTAN Parameter LB_APPROACH = repartition
ZOLTAN Parameter RCB_OVERALLOC = 1.200000
ZOLTAN Parameter RCB_REUSE = 0
ZOLTAN Parameter CHECK_GEOM = 1
ZOLTAN Parameter RCB_OUTPUT_LEVEL = 0
ZOLTAN Parameter KEEP_CUTS = 0
ZOLTAN Parameter RCB_LOCK_DIRECTIONS = 0
ZOLTAN Parameter RCB_SET_DIRECTIONS = 0
ZOLTAN Parameter RCB_RECTILINEAR_BLOCKS = 0
ZOLTAN Parameter OBJ_WEIGHTS_COMPARABLE = 0
ZOLTAN Parameter RCB_MULTICRITERIA_NORM = 1
ZOLTAN Parameter RCB_MAX_ASPECT_RATIO = 10.000000
ZOLTAN Parameter AVERAGE_CUTS = 0
ZOLTAN Parameter RANDOM_PIVOTS = 0
ZOLTAN Parameter RCB_RECOMPUTE_BOX = 0
ZOLTAN Parameter REDUCE_DIMENSIONS = 0
ZOLTAN Parameter DEGENERATE_RATIO = 0.000000
ZOLTAN Parameter FINAL_OUTPUT = 0
ZOLTAN Parameter KEEP_CUTS = 0
ZOLTAN Parameter REDUCE_DIMENSIONS = 0
ZOLTAN Parameter DEGENERATE_RATIO = 10.000000
done
Quinoa> Reordering mesh ... done
Quinoa> Creating workers
Quinoa> Linear system communication cost: avg = 0.195648, std = 0.097498
Quinoa> Reading mesh node coordinates, computing nodal volumes
Quinoa> Mesh statistics: min/max/avg(edgelength) = 0.020000 / 0.034641 / 0.025496
Quinoa> Mesh statistics: min/max/avg(V^{1/3}) = 0.011006 / 0.011006 / 0.011006
Quinoa> Computing row IDs, querying BCs, outputting mesh done
Quinoa> Setting and outputting ICs, computing initial dt, computing LHS ... done
Quinoa> Starting time stepping ...

 * Time integration: Unstructured-mesh PDE solver testbed
 --------------------------------------------------------
     Legend: it - iteration count
              t - time
             dt - time step size
            ETE - estimated time elapsed (h:m:s)
            ETA - estimated time for accomplishment (h:m:s)
            out - output-saved flags (F: field, D: diagnostics)

      it             t            dt        ETE        ETA   out
 ---------------------------------------------------------------
       1  7.782717e-03  7.782717e-03  000:00:00  000:00:28  D
       2  1.556543e-02  7.782717e-03  000:00:00  000:00:28  D
       3  2.334815e-02  7.782717e-03  000:00:00  000:00:28  D
       4  3.113087e-02  7.782717e-03  000:00:00  000:00:29  D
       5  3.891359e-02  7.782717e-03  000:00:00  000:00:29  D
       6  4.669630e-02  7.782717e-03  000:00:00  000:00:29  D
       7  5.447902e-02  7.782717e-03  000:00:01  000:00:30  D
       8  6.226174e-02  7.782717e-03  000:00:01  000:00:30  D
       9  7.004445e-02  7.782717e-03  000:00:01  000:00:30  D
      10  7.782717e-02  7.782717e-03  000:00:01  000:00:31  FD
      11  8.560989e-02  7.782717e-03  000:00:01  000:00:31  D
      12  9.339261e-02  7.782717e-03  000:00:01  000:00:31  D
      13  1.011753e-01  7.782717e-03  000:00:02  000:00:31  D
      14  1.089580e-01  7.782717e-03  000:00:02  000:00:30  D
      15  1.167408e-01  7.782717e-03  000:00:02  000:00:30  D
      16  1.245235e-01  7.782717e-03  000:00:02  000:00:30  D
      17  1.323062e-01  7.782717e-03  000:00:02  000:00:29  D
      18  1.400889e-01  7.782717e-03  000:00:02  000:00:29  D
      19  1.478716e-01  7.782717e-03  000:00:03  000:00:29  D
      20  1.556543e-01  7.782717e-03  000:00:03  000:00:29  FD
      21  1.634371e-01  7.782717e-03  000:00:03  000:00:29  D
      22  1.712198e-01  7.782717e-03  000:00:03  000:00:29  D
      23  1.790025e-01  7.782717e-03  000:00:03  000:00:30  D
      24  1.867852e-01  7.782717e-03  000:00:04  000:00:30  D
      25  1.945679e-01  7.782717e-03  000:00:04  000:00:30  D
      26  2.023506e-01  7.782717e-03  000:00:04  000:00:30  D
      27  2.101334e-01  7.782717e-03  000:00:04  000:00:30  D
      28  2.179161e-01  7.782717e-03  000:00:04  000:00:29  D
      29  2.256988e-01  7.782717e-03  000:00:04  000:00:29  D
      30  2.334815e-01  7.782717e-03  000:00:05  000:00:29  FD
      31  2.412642e-01  7.782717e-03  000:00:05  000:00:29  D
      32  2.490469e-01  7.782717e-03  000:00:05  000:00:28  D
      33  2.568297e-01  7.782717e-03  000:00:05  000:00:28  D
      34  2.646124e-01  7.782717e-03  000:00:05  000:00:28  D
      35  2.723951e-01  7.782717e-03  000:00:05  000:00:28  D
      36  2.801778e-01  7.782717e-03  000:00:06  000:00:27  D
      37  2.879605e-01  7.782717e-03  000:00:06  000:00:27  D
      38  2.957433e-01  7.782717e-03  000:00:06  000:00:27  D
      39  3.035260e-01  7.782717e-03  000:00:06  000:00:27  D
      40  3.113087e-01  7.782717e-03  000:00:06  000:00:27  FD
      41  3.190914e-01  7.782717e-03  000:00:06  000:00:26  D
      42  3.268741e-01  7.782717e-03  000:00:07  000:00:26  D
      43  3.346568e-01  7.782717e-03  000:00:07  000:00:26  D
      44  3.424396e-01  7.782717e-03  000:00:07  000:00:26  D
      45  3.502223e-01  7.782717e-03  000:00:07  000:00:26  D
      46  3.580050e-01  7.782717e-03  000:00:07  000:00:26  D
      47  3.657877e-01  7.782717e-03  000:00:07  000:00:25  D
      48  3.735704e-01  7.782717e-03  000:00:07  000:00:25  D
      49  3.813531e-01  7.782717e-03  000:00:08  000:00:25  D
      50  3.891359e-01  7.782717e-03  000:00:08  000:00:25  FD
      51  3.969186e-01  7.782717e-03  000:00:08  000:00:25  D
      52  4.047013e-01  7.782717e-03  000:00:08  000:00:24  D
      53  4.124840e-01  7.782717e-03  000:00:08  000:00:24  D
      54  4.202667e-01  7.782717e-03  000:00:08  000:00:24  D
      55  4.280494e-01  7.782717e-03  000:00:09  000:00:24  D
      56  4.358322e-01  7.782717e-03  000:00:09  000:00:24  D
      57  4.436149e-01  7.782717e-03  000:00:09  000:00:23  D
      58  4.513976e-01  7.782717e-03  000:00:09  000:00:23  D
      59  4.591803e-01  7.782717e-03  000:00:09  000:00:23  D
      60  4.669630e-01  7.782717e-03  000:00:09  000:00:23  FD
      61  4.747457e-01  7.782717e-03  000:00:10  000:00:23  D
      62  4.825285e-01  7.782717e-03  000:00:10  000:00:23  D
      63  4.903112e-01  7.782717e-03  000:00:10  000:00:22  D
      64  4.980939e-01  7.782717e-03  000:00:10  000:00:22  D
      65  5.058766e-01  7.782717e-03  000:00:10  000:00:22  D
      66  5.136593e-01  7.782717e-03  000:00:10  000:00:22  D
      67  5.214420e-01  7.782717e-03  000:00:10  000:00:22  D
      68  5.292248e-01  7.782717e-03  000:00:11  000:00:21  D
      69  5.370075e-01  7.782717e-03  000:00:11  000:00:21  D
      70  5.447902e-01  7.782717e-03  000:00:11  000:00:21  FD
      71  5.525729e-01  7.782717e-03  000:00:11  000:00:21  D
      72  5.603556e-01  7.782717e-03  000:00:11  000:00:21  D
      73  5.681384e-01  7.782717e-03  000:00:11  000:00:21  D
      74  5.759211e-01  7.782717e-03  000:00:12  000:00:21  D
      75  5.837038e-01  7.782717e-03  000:00:12  000:00:20  D
      76  5.914865e-01  7.782717e-03  000:00:12  000:00:20  D
      77  5.992692e-01  7.782717e-03  000:00:12  000:00:20  D
      78  6.070519e-01  7.782717e-03  000:00:12  000:00:20  D
      79  6.148347e-01  7.782717e-03  000:00:12  000:00:20  D
      80  6.226174e-01  7.782717e-03  000:00:13  000:00:20  FD
      81  6.304001e-01  7.782717e-03  000:00:13  000:00:19  D
      82  6.381828e-01  7.782717e-03  000:00:13  000:00:19  D
      83  6.459655e-01  7.782717e-03  000:00:13  000:00:19  D
      84  6.537482e-01  7.782717e-03  000:00:13  000:00:19  D
      85  6.615310e-01  7.782717e-03  000:00:13  000:00:19  D
      86  6.693137e-01  7.782717e-03  000:00:14  000:00:19  D
      87  6.770964e-01  7.782717e-03  000:00:14  000:00:18  D
      88  6.848791e-01  7.782717e-03  000:00:14  000:00:18  D
      89  6.926618e-01  7.782717e-03  000:00:14  000:00:18  D
      90  7.004445e-01  7.782717e-03  000:00:14  000:00:18  FD
      91  7.082273e-01  7.782717e-03  000:00:14  000:00:18  D
      92  7.160100e-01  7.782717e-03  000:00:15  000:00:18  D
      93  7.237927e-01  7.782717e-03  000:00:15  000:00:17  D
      94  7.315754e-01  7.782717e-03  000:00:15  000:00:17  D
      95  7.393581e-01  7.782717e-03  000:00:15  000:00:17  D
      96  7.471408e-01  7.782717e-03  000:00:15  000:00:17  D
      97  7.549236e-01  7.782717e-03  000:00:15  000:00:17  D
      98  7.627063e-01  7.782717e-03  000:00:16  000:00:17  D
      99  7.704890e-01  7.782717e-03  000:00:16  000:00:16  D
     100  7.782717e-01  7.782717e-03  000:00:16  000:00:16  FD
     101  7.860544e-01  7.782717e-03  000:00:16  000:00:16  D
     102  7.938372e-01  7.782717e-03  000:00:16  000:00:16  D
     103  8.016199e-01  7.782717e-03  000:00:16  000:00:16  D
     104  8.094026e-01  7.782717e-03  000:00:17  000:00:15  D
     105  8.171853e-01  7.782717e-03  000:00:17  000:00:15  D
     106  8.249680e-01  7.782717e-03  000:00:17  000:00:15  D
     107  8.327507e-01  7.782717e-03  000:00:17  000:00:15  D
     108  8.405335e-01  7.782717e-03  000:00:17  000:00:15  D
     109  8.483162e-01  7.782717e-03  000:00:17  000:00:15  D
     110  8.560989e-01  7.782717e-03  000:00:17  000:00:15  FD
     111  8.638816e-01  7.782717e-03  000:00:18  000:00:14  D
     112  8.716643e-01  7.782717e-03  000:00:18  000:00:14  D
     113  8.794470e-01  7.782717e-03  000:00:18  000:00:14  D
     114  8.872298e-01  7.782717e-03  000:00:18  000:00:14  D
     115  8.950125e-01  7.782717e-03  000:00:18  000:00:14  D
     116  9.027952e-01  7.782717e-03  000:00:18  000:00:14  D
     117  9.105779e-01  7.782717e-03  000:00:19  000:00:13  D
     118  9.183606e-01  7.782717e-03  000:00:19  000:00:13  D
     119  9.261433e-01  7.782717e-03  000:00:19  000:00:13  D
     120  9.339261e-01  7.782717e-03  000:00:19  000:00:13  FD
     121  9.417088e-01  7.782717e-03  000:00:20  000:00:13  D
     122  9.494915e-01  7.782717e-03  000:00:20  000:00:13  D
     123  9.572742e-01  7.782717e-03  000:00:20  000:00:13  D
     124  9.650569e-01  7.782717e-03  000:00:20  000:00:13  D
     125  9.728396e-01  7.782717e-03  000:00:20  000:00:12  D
     126  9.806224e-01  7.782717e-03  000:00:21  000:00:12  D
     127  9.884051e-01  7.782717e-03  000:00:21  000:00:12  D
     128  9.961878e-01  7.782717e-03  000:00:21  000:00:12  D
     129  1.003971e+00  7.782717e-03  000:00:21  000:00:12  D
     130  1.011753e+00  7.782717e-03  000:00:21  000:00:12  FD
     131  1.019536e+00  7.782717e-03  000:00:21  000:00:11  D
     132  1.027319e+00  7.782717e-03  000:00:22  000:00:11  D
     133  1.035101e+00  7.782717e-03  000:00:22  000:00:11  D
     134  1.042884e+00  7.782717e-03  000:00:22  000:00:11  D
     135  1.050667e+00  7.782717e-03  000:00:22  000:00:11  D
     136  1.058450e+00  7.782717e-03  000:00:23  000:00:11  D
     137  1.066232e+00  7.782717e-03  000:00:23  000:00:10  D
     138  1.074015e+00  7.782717e-03  000:00:23  000:00:10  D
     139  1.081798e+00  7.782717e-03  000:00:23  000:00:10  D
     140  1.089580e+00  7.782717e-03  000:00:23  000:00:10  FD
     141  1.097363e+00  7.782717e-03  000:00:23  000:00:10  D
     142  1.105146e+00  7.782717e-03  000:00:24  000:00:10  D
     143  1.112929e+00  7.782717e-03  000:00:24  000:00:10  D
     144  1.120711e+00  7.782717e-03  000:00:24  000:00:09  D
     145  1.128494e+00  7.782717e-03  000:00:24  000:00:09  D
     146  1.136277e+00  7.782717e-03  000:00:24  000:00:09  D
     147  1.144059e+00  7.782717e-03  000:00:25  000:00:09  D
     148  1.151842e+00  7.782717e-03  000:00:25  000:00:09  D
     149  1.159625e+00  7.782717e-03  000:00:25  000:00:09  D
     150  1.167408e+00  7.782717e-03  000:00:25  000:00:08  FD
     151  1.175190e+00  7.782717e-03  000:00:25  000:00:08  D
     152  1.182973e+00  7.782717e-03  000:00:25  000:00:08  D
     153  1.190756e+00  7.782717e-03  000:00:26  000:00:08  D
     154  1.198538e+00  7.782717e-03  000:00:26  000:00:08  D
     155  1.206321e+00  7.782717e-03  000:00:26  000:00:08  D
     156  1.214104e+00  7.782717e-03  000:00:26  000:00:07  D
     157  1.221887e+00  7.782717e-03  000:00:26  000:00:07  D
     158  1.229669e+00  7.782717e-03  000:00:27  000:00:07  D
     159  1.237452e+00  7.782717e-03  000:00:27  000:00:07  D
     160  1.245235e+00  7.782717e-03  000:00:27  000:00:07  FD
     161  1.253017e+00  7.782717e-03  000:00:27  000:00:07  D
     162  1.260800e+00  7.782717e-03  000:00:27  000:00:06  D
     163  1.268583e+00  7.782717e-03  000:00:28  000:00:06  D
     164  1.276366e+00  7.782717e-03  000:00:28  000:00:06  D
     165  1.284148e+00  7.782717e-03  000:00:28  000:00:06  D
     166  1.291931e+00  7.782717e-03  000:00:28  000:00:06  D
     167  1.299714e+00  7.782717e-03  000:00:28  000:00:06  D
     168  1.307496e+00  7.782717e-03  000:00:29  000:00:05  D
     169  1.315279e+00  7.782717e-03  000:00:29  000:00:05  D
     170  1.323062e+00  7.782717e-03  000:00:29  000:00:05  FD
     171  1.330845e+00  7.782717e-03  000:00:29  000:00:05  D
     172  1.338627e+00  7.782717e-03  000:00:29  000:00:05  D
     173  1.346410e+00  7.782717e-03  000:00:30  000:00:05  D
     174  1.354193e+00  7.782717e-03  000:00:30  000:00:04  D
     175  1.361976e+00  7.782717e-03  000:00:30  000:00:04  D
     176  1.369758e+00  7.782717e-03  000:00:30  000:00:04  D
     177  1.377541e+00  7.782717e-03  000:00:30  000:00:04  D
     178  1.385324e+00  7.782717e-03  000:00:30  000:00:04  D
     179  1.393106e+00  7.782717e-03  000:00:31  000:00:03  D
     180  1.400889e+00  7.782717e-03  000:00:31  000:00:03  FD
     181  1.408672e+00  7.782717e-03  000:00:31  000:00:03  D
     182  1.416455e+00  7.782717e-03  000:00:31  000:00:03  D
     183  1.424237e+00  7.782717e-03  000:00:31  000:00:03  D
     184  1.432020e+00  7.782717e-03  000:00:31  000:00:03  D
     185  1.439803e+00  7.782717e-03  000:00:32  000:00:02  D
     186  1.447585e+00  7.782717e-03  000:00:32  000:00:02  D
     187  1.455368e+00  7.782717e-03  000:00:32  000:00:02  D
     188  1.463151e+00  7.782717e-03  000:00:32  000:00:02  D
     189  1.470934e+00  7.782717e-03  000:00:32  000:00:02  D
     190  1.478716e+00  7.782717e-03  000:00:32  000:00:02  FD
     191  1.486499e+00  7.782717e-03  000:00:33  000:00:01  D
     192  1.494282e+00  7.782717e-03  000:00:33  000:00:01  D
     193  1.502064e+00  7.782717e-03  000:00:33  000:00:01  D
     194  1.509847e+00  7.782717e-03  000:00:33  000:00:01  D
     195  1.517630e+00  7.782717e-03  000:00:33  000:00:01  D
     196  1.525413e+00  7.782717e-03  000:00:33  000:00:01  D
     197  1.533195e+00  7.782717e-03  000:00:34  000:00:00  D
     198  1.540978e+00  7.782717e-03  000:00:34  000:00:00  D
     199  1.548761e+00  7.782717e-03  000:00:34  000:00:00  D
     200  1.556543e+00  7.782717e-03  000:00:34  000:00:00  FD
     201  1.564326e+00  7.782717e-03  000:00:34  000:00:00  D
     202  1.570796e+00  6.470177e-03  000:00:34  000:00:00  D

     Normal finish, maximum time reached: 1.570796

 * Timers (h:m:s):
 -----------------
     Migrate global-scope data                                                   : 0:0:0
     Total runtime                                                               : 0:0:35

[Partition 0][Node 0] End of program
$ cp diag diag.750K
$ ./charmrun +p36 Main/inciter -v -c slot_cyl.q -i unitcube_01_6M.exo

Running on 36 processors:  Main/inciter -v -c slot_cyl.q -i unitcube_01_6M.exo
charmrun>  /usr/bin/setarch x86_64 -R  mpirun -np 36  Main/inciter -v -c slot_cyl.q -i unitcube_01_6M.exo
Charm++> Running on MPI version: 3.1
Charm++> level of thread support used: MPI_THREAD_SINGLE (desired: MPI_THREAD_SINGLE)
Charm++> Running in non-SMP mode: numPes 36
Converse/Charm++ Commit ID:
CharmLB> Load balancer assumes all CPUs are same.
Charm++> Running on 1 unique compute nodes (36-way SMP).
Charm++> cpu topology info is gathered in 0.022 seconds.

      ,::,`                                                            `.
   .;;;'';;;:                                                          ;;#
  ;;;@+   +;;;  ;;;;;,   ;;;;. ;;;;;, ;;;;      ;;;;   `;;;;;;:        ;;;
 :;;@`     :;;' .;;;@,    ,;@, ,;;;@: .;;;'     .;+;. ;;;@#:';;;      ;;;;'
 ;;;#       ;;;: ;;;'      ;:   ;;;'   ;;;;;     ;#  ;;;@     ;;;     ;+;;'
.;;+        ;;;# ;;;'      ;:   ;;;'   ;#;;;`    ;#  ;;@      `;;+   .;#;;;.
;;;#        :;;' ;;;'      ;:   ;;;'   ;# ;;;    ;# ;;;@       ;;;   ;# ;;;+
;;;#        .;;; ;;;'      ;:   ;;;'   ;# ,;;;   ;# ;;;#       ;;;:  ;@  ;;;
;;;#        .;;' ;;;'      ;:   ;;;'   ;#  ;;;;  ;# ;;;'       ;;;+ ;',  ;;;@
;;;+        ,;;+ ;;;'      ;:   ;;;'   ;#   ;;;' ;# ;;;'       ;;;' ;':::;;;;
`;;;        ;;;@ ;;;'      ;:   ;;;'   ;#    ;;;';# ;;;@       ;;;:,;+++++;;;'
 ;;;;       ;;;@ ;;;#     .;.   ;;;'   ;#     ;;;;# `;;+       ;;# ;#     ;;;'
 .;;;      :;;@  ,;;+     ;+    ;;;'   ;#      ;;;#  ;;;      ;;;@ ;@      ;;;.
  ';;;    ;;;@,   ;;;;``.;;@    ;;;'   ;+      .;;#   ;;;    :;;@ ;;;      ;;;+
   :;;;;;;;+@`     ';;;;;'@    ;;;;;, ;;;;      ;;+    +;;;;;;#@ ;;;;.   .;;;;;;
     .;;#@'         `#@@@:     ;::::; ;::::      ;@      '@@@+   ;:::;    ;::::::
    :;;;;;;.     .___              .__  __
   .;@+@';;;;;;' |   | ____   ____ |__|/  |_  ___________
    `     '#''@` |   |/    \_/ ___\|  \   __\/ __ \_  __ \
                 |   |   |  \  \___|  ||  | \  ___/|  | \/
                 |___|___|  /\___  >__||__|  \___  >__|
                          \/     \/              \/

                                 < ENVIRONMENT >
                                 ------ o ------

 * Build environment:
 --------------------
     Hostname                       : lagrange
     Executable                     : inciter
     Version                        : 0.1 (C16015)
     Revision SHA1                  : Quinoa_v0.1-914-g40abfa98
     CMake build type               : RELEASE
     Asserts                        : off (turn on: CMAKE_BUILD_TYPE=DEBUG)
     Exception trace                : off (turn on: CMAKE_BUILD_TYPE=DEBUG)
     MPI C++ wrapper                : /usr/bin/mpicxx
     Underlying C++ compiler        : /usr/bin/g++
     Build date                     : Sun Jun  4 13:51:45 MDT 2017

 * Run-time environment:
 -----------------------
     Date, time                     : Mon Jun  5 07:08:32 2017
     Work directory                 : /home/jbakosi/code/quinoa/build/gnu
     Executable (rel. to work dir)  : Main/inciter
     Command line arguments         : '-v -c slot_cyl.q -i unitcube_01_6M.exo'
     Output                         : verbose (quiet: omit -v)
     Control file                   : slot_cyl.q
     Parsed control file            : success


                                   < FACTORY >
                                   ---- o ----

 * Unknowns data layout (CMake: FIELD_DATA_LAYOUT):
 --------------------------------------------------
     unknown-major

 * Registered partial differential equations:
 --------------------------------------------
     Unique equation types          : 2
     With all policy combinations   : 12

     Legend: equation name : supported policies

     Policy codes:
      * h: physics configuration:
        A - Advection
        D - Advection + diffusion
        L - Laplace
        N - Navier-Stokes
        E - Euler
      * r: problem:
        U - User-defined
        S - Shear-diffusion
        D - Dirichlet & Neumann
        V - Vortical flow
        V - Nonlinear energy growth
        V - Rayleigh-Taylor
        Z - Zalesak's slotted cylinder

     Compressible flow              : h:EN, r:UV
     Transport                      : h:AD, r:SZ


                                   < PROBLEM >
                                   ---- o ----

 * Title: Zalesak's slotted cylinder
 -----------------------------------

 * Partial differential equations integrated (1):
 ------------------------------------------------
   < Transport >
     problem                        : Zalesak's slotted cylinder
     start offset in unknowns array : 0
     number of components           : 1

 * Discretization parameters:
 ----------------------------
     Number of time steps           : 18446744073709551615
     Start time                     : 0
     Terminate time                 : 1.5708
     CFL coefficient                : 0.5
     Mass diffusion coeff           : 1

 * Output filenames:
 -------------------
     Field                          : out.<chareid>
     Diagnostics                    : diag

 * Output intervals:
 -------------------
     TTY                            : 1
     Field                          : 10
     Diagnostics                    : 1

Quinoa> Reading side sets ... done
Quinoa> Creating linear system mergers
Quinoa> Creating particle writers
Quinoa> Creating partitioners and reading mesh graph ... done

 * Input mesh graph statistics:
 ------------------------------
     Number of tetrahedra           : 6000000
     Number of nodes                : 1030301

 * Load distribution:
 --------------------
     Virtualization [0.0...1.0]     : 0
     Load (number of tetrahedra)    : 6000000
     Number of processing elements  : 36
     Number of work units           : 36 (35*166666+166690)

 * Initial mesh partitioning:
 ----------------------------
     Mesh partitioning algorithm    : recursive coordinate bisection

Quinoa> Mesh read time: 0.230858 sec
Quinoa> Partitioning and distributing mesh ... ZOLTAN Load balancing method = 3 (RCB)
Build configuration:

  ZOLTAN_ID_TYPE: unsigned int (4 bytes)
  ZOLTAN_GNO_TYPE: ssize_t, (8 bytes)
  MPI_Datatype for ZOLTAN_ID_TYPE: MPI_UNSIGNED
  MPI_Datatype for ZOLTAN_GNO_TYPE: MPI_LONG

ZOLTAN Parameter IMBALANCE_TOL[0] = 1.100000
ZOLTAN Parameter AUTO_MIGRATE = FALSE
ZOLTAN Parameter MIGRATE_ONLY_PROC_CHANGES = 1
ZOLTAN Parameter OBJ_WEIGHT_DIM = 0
ZOLTAN Parameter EDGE_WEIGHT_DIM = 0
ZOLTAN Parameter DEBUG_LEVEL = 1
ZOLTAN Parameter DEBUG_PROCESSOR = 0
ZOLTAN Parameter DETERMINISTIC = TRUE
ZOLTAN Parameter TIMER = 1 (wall)
ZOLTAN Parameter NUM_GID_ENTRIES = 2
ZOLTAN Parameter NUM_LID_ENTRIES = 2
ZOLTAN Parameter RETURN_LISTS = PARTITION ASSIGNMENTS
ZOLTAN Parameter NUM_GLOBAL_PARTS = 36
ZOLTAN Parameter NUM_LOCAL_PARTS = -1
ZOLTAN Parameter REMAP = 1
ZOLTAN Parameter SEED = 123456789 (123456789)
ZOLTAN Parameter LB_APPROACH = repartition
ZOLTAN Parameter RCB_OVERALLOC = 1.200000
ZOLTAN Parameter RCB_REUSE = 0
ZOLTAN Parameter CHECK_GEOM = 1
ZOLTAN Parameter RCB_OUTPUT_LEVEL = 0
ZOLTAN Parameter KEEP_CUTS = 0
ZOLTAN Parameter RCB_LOCK_DIRECTIONS = 0
ZOLTAN Parameter RCB_SET_DIRECTIONS = 0
ZOLTAN Parameter RCB_RECTILINEAR_BLOCKS = 0
ZOLTAN Parameter OBJ_WEIGHTS_COMPARABLE = 0
ZOLTAN Parameter RCB_MULTICRITERIA_NORM = 1
ZOLTAN Parameter RCB_MAX_ASPECT_RATIO = 10.000000
ZOLTAN Parameter AVERAGE_CUTS = 0
ZOLTAN Parameter RANDOM_PIVOTS = 0
ZOLTAN Parameter RCB_RECOMPUTE_BOX = 0
ZOLTAN Parameter REDUCE_DIMENSIONS = 0
ZOLTAN Parameter DEGENERATE_RATIO = 0.000000
ZOLTAN Parameter FINAL_OUTPUT = 0
ZOLTAN Parameter KEEP_CUTS = 0
ZOLTAN Parameter REDUCE_DIMENSIONS = 0
ZOLTAN Parameter DEGENERATE_RATIO = 10.000000
done
Quinoa> Reordering mesh ... done
Quinoa> Creating workers
Quinoa> Reading mesh node coordinates, computing nodal volumes
Quinoa> Linear system communication cost: avg = 0.091166, std = 0.054424
Quinoa> Mesh statistics: min/max/avg(edgelength) = 0.010000 / 0.017321 / 0.012771
Quinoa> Mesh statistics: min/max/avg(V^{1/3}) = 0.005503 / 0.005503 / 0.005503
Quinoa> Computing row IDs, querying BCs, outputting mesh done
Quinoa> Setting and outputting ICs, computing initial dt, computing LHS ... done
Quinoa> Starting time stepping ...

 * Time integration: Unstructured-mesh PDE solver testbed
 --------------------------------------------------------
     Legend: it - iteration count
              t - time
             dt - time step size
            ETE - estimated time elapsed (h:m:s)
            ETA - estimated time for accomplishment (h:m:s)
            out - output-saved flags (F: field, D: diagnostics)

      it             t            dt        ETE        ETA   out
 ---------------------------------------------------------------
       1  3.891359e-03  3.891359e-03  000:00:01  000:08:19  D
       2  7.782717e-03  3.891359e-03  000:00:02  000:08:38  D
       3  1.167408e-02  3.891359e-03  000:00:03  000:08:47  D
       4  1.556543e-02  3.891359e-03  000:00:05  000:08:42  D
       5  1.945679e-02  3.891359e-03  000:00:06  000:08:48  D
       6  2.334815e-02  3.891359e-03  000:00:07  000:08:46  D
       7  2.723951e-02  3.891359e-03  000:00:09  000:09:11  D
       8  3.113087e-02  3.891359e-03  000:00:11  000:09:09  D
       9  3.502223e-02  3.891359e-03  000:00:12  000:09:10  D
      10  3.891359e-02  3.891359e-03  000:00:13  000:09:08  FD
      11  4.280494e-02  3.891359e-03  000:00:15  000:09:06  D
      12  4.669630e-02  3.891359e-03  000:00:16  000:09:01  D
      13  5.058766e-02  3.891359e-03  000:00:17  000:09:00  D
      14  5.447902e-02  3.891359e-03  000:00:19  000:08:57  D
      15  5.837038e-02  3.891359e-03  000:00:20  000:08:56  D
      16  6.226174e-02  3.891359e-03  000:00:22  000:08:54  D
      17  6.615310e-02  3.891359e-03  000:00:23  000:08:53  D
      18  7.004445e-02  3.891359e-03  000:00:25  000:08:56  D
      19  7.393581e-02  3.891359e-03  000:00:27  000:09:08  D
      20  7.782717e-02  3.891359e-03  000:00:28  000:09:08  FD
      21  8.171853e-02  3.891359e-03  000:00:30  000:09:07  D
      22  8.560989e-02  3.891359e-03  000:00:31  000:09:05  D
      23  8.950125e-02  3.891359e-03  000:00:32  000:09:02  D
      24  9.339261e-02  3.891359e-03  000:00:34  000:08:59  D
      25  9.728396e-02  3.891359e-03  000:00:35  000:08:57  D
      26  1.011753e-01  3.891359e-03  000:00:36  000:08:55  D
      27  1.050667e-01  3.891359e-03  000:00:38  000:08:53  D
      28  1.089580e-01  3.891359e-03  000:00:39  000:08:51  D
      29  1.128494e-01  3.891359e-03  000:00:40  000:08:49  D
      30  1.167408e-01  3.891359e-03  000:00:42  000:08:51  FD
      31  1.206321e-01  3.891359e-03  000:00:44  000:08:50  D
      32  1.245235e-01  3.891359e-03  000:00:45  000:08:46  D
      33  1.284148e-01  3.891359e-03  000:00:46  000:08:45  D
      34  1.323062e-01  3.891359e-03  000:00:48  000:08:43  D
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     261  1.015645e+00  3.891359e-03  000:06:10  000:03:22  D
     262  1.019536e+00  3.891359e-03  000:06:12  000:03:21  D
     263  1.023427e+00  3.891359e-03  000:06:13  000:03:19  D
     264  1.027319e+00  3.891359e-03  000:06:15  000:03:18  D
     265  1.031210e+00  3.891359e-03  000:06:16  000:03:17  D
     266  1.035101e+00  3.891359e-03  000:06:17  000:03:15  D
     267  1.038993e+00  3.891359e-03  000:06:19  000:03:14  D
     268  1.042884e+00  3.891359e-03  000:06:20  000:03:12  D
     269  1.046775e+00  3.891359e-03  000:06:22  000:03:11  D
     270  1.050667e+00  3.891359e-03  000:06:23  000:03:09  FD
     271  1.054558e+00  3.891359e-03  000:06:25  000:03:08  D
     272  1.058450e+00  3.891359e-03  000:06:26  000:03:07  D
     273  1.062341e+00  3.891359e-03  000:06:28  000:03:05  D
     274  1.066232e+00  3.891359e-03  000:06:29  000:03:04  D
     275  1.070124e+00  3.891359e-03  000:06:31  000:03:03  D
     276  1.074015e+00  3.891359e-03  000:06:32  000:03:01  D
     277  1.077906e+00  3.891359e-03  000:06:34  000:03:00  D
     278  1.081798e+00  3.891359e-03  000:06:35  000:02:58  D
     279  1.085689e+00  3.891359e-03  000:06:36  000:02:57  D
     280  1.089580e+00  3.891359e-03  000:06:38  000:02:55  FD
     281  1.093472e+00  3.891359e-03  000:06:39  000:02:54  D
     282  1.097363e+00  3.891359e-03  000:06:41  000:02:53  D
     283  1.101254e+00  3.891359e-03  000:06:42  000:02:51  D
     284  1.105146e+00  3.891359e-03  000:06:44  000:02:50  D
     285  1.109037e+00  3.891359e-03  000:06:45  000:02:49  D
     286  1.112929e+00  3.891359e-03  000:06:47  000:02:47  D
     287  1.116820e+00  3.891359e-03  000:06:48  000:02:46  D
     288  1.120711e+00  3.891359e-03  000:06:50  000:02:44  D
     289  1.124603e+00  3.891359e-03  000:06:51  000:02:43  D
     290  1.128494e+00  3.891359e-03  000:06:52  000:02:41  FD
     291  1.132385e+00  3.891359e-03  000:06:54  000:02:40  D
     292  1.136277e+00  3.891359e-03  000:06:55  000:02:39  D
     293  1.140168e+00  3.891359e-03  000:06:57  000:02:37  D
     294  1.144059e+00  3.891359e-03  000:06:58  000:02:36  D
     295  1.147951e+00  3.891359e-03  000:07:00  000:02:34  D
     296  1.151842e+00  3.891359e-03  000:07:01  000:02:33  D
     297  1.155733e+00  3.891359e-03  000:07:03  000:02:31  D
     298  1.159625e+00  3.891359e-03  000:07:04  000:02:30  D
     299  1.163516e+00  3.891359e-03  000:07:05  000:02:29  D
     300  1.167408e+00  3.891359e-03  000:07:07  000:02:27  FD
     301  1.171299e+00  3.891359e-03  000:07:08  000:02:26  D
     302  1.175190e+00  3.891359e-03  000:07:10  000:02:24  D
     303  1.179082e+00  3.891359e-03  000:07:11  000:02:23  D
     304  1.182973e+00  3.891359e-03  000:07:12  000:02:21  D
     305  1.186864e+00  3.891359e-03  000:07:14  000:02:20  D
     306  1.190756e+00  3.891359e-03  000:07:15  000:02:19  D
     307  1.194647e+00  3.891359e-03  000:07:17  000:02:17  D
     308  1.198538e+00  3.891359e-03  000:07:18  000:02:16  D
     309  1.202430e+00  3.891359e-03  000:07:20  000:02:14  D
     310  1.206321e+00  3.891359e-03  000:07:21  000:02:13  FD
     311  1.210213e+00  3.891359e-03  000:07:23  000:02:12  D
     312  1.214104e+00  3.891359e-03  000:07:24  000:02:10  D
     313  1.217995e+00  3.891359e-03  000:07:26  000:02:09  D
     314  1.221887e+00  3.891359e-03  000:07:28  000:02:07  D
     315  1.225778e+00  3.891359e-03  000:07:29  000:02:06  D
     316  1.229669e+00  3.891359e-03  000:07:31  000:02:05  D
     317  1.233561e+00  3.891359e-03  000:07:32  000:02:03  D
     318  1.237452e+00  3.891359e-03  000:07:34  000:02:02  D
     319  1.241343e+00  3.891359e-03  000:07:35  000:02:00  D
     320  1.245235e+00  3.891359e-03  000:07:37  000:01:59  FD
     321  1.249126e+00  3.891359e-03  000:07:38  000:01:58  D
     322  1.253017e+00  3.891359e-03  000:07:39  000:01:56  D
     323  1.256909e+00  3.891359e-03  000:07:41  000:01:55  D
     324  1.260800e+00  3.891359e-03  000:07:42  000:01:53  D
     325  1.264692e+00  3.891359e-03  000:07:43  000:01:52  D
     326  1.268583e+00  3.891359e-03  000:07:45  000:01:50  D
     327  1.272474e+00  3.891359e-03  000:07:46  000:01:49  D
     328  1.276366e+00  3.891359e-03  000:07:48  000:01:48  D
     329  1.280257e+00  3.891359e-03  000:07:50  000:01:46  D
     330  1.284148e+00  3.891359e-03  000:07:51  000:01:45  FD
     331  1.288040e+00  3.891359e-03  000:07:52  000:01:43  D
     332  1.291931e+00  3.891359e-03  000:07:54  000:01:42  D
     333  1.295822e+00  3.891359e-03  000:07:55  000:01:40  D
     334  1.299714e+00  3.891359e-03  000:07:57  000:01:39  D
     335  1.303605e+00  3.891359e-03  000:07:58  000:01:38  D
     336  1.307496e+00  3.891359e-03  000:08:00  000:01:36  D
     337  1.311388e+00  3.891359e-03  000:08:01  000:01:35  D
     338  1.315279e+00  3.891359e-03  000:08:02  000:01:33  D
     339  1.319171e+00  3.891359e-03  000:08:04  000:01:32  D
     340  1.323062e+00  3.891359e-03  000:08:05  000:01:30  FD
     341  1.326953e+00  3.891359e-03  000:08:07  000:01:29  D
     342  1.330845e+00  3.891359e-03  000:08:08  000:01:28  D
     343  1.334736e+00  3.891359e-03  000:08:10  000:01:26  D
     344  1.338627e+00  3.891359e-03  000:08:11  000:01:25  D
     345  1.342519e+00  3.891359e-03  000:08:13  000:01:23  D
     346  1.346410e+00  3.891359e-03  000:08:14  000:01:22  D
     347  1.350301e+00  3.891359e-03  000:08:15  000:01:20  D
     348  1.354193e+00  3.891359e-03  000:08:17  000:01:19  D
     349  1.358084e+00  3.891359e-03  000:08:18  000:01:18  D
     350  1.361976e+00  3.891359e-03  000:08:19  000:01:16  FD
     351  1.365867e+00  3.891359e-03  000:08:21  000:01:15  D
     352  1.369758e+00  3.891359e-03  000:08:22  000:01:13  D
     353  1.373650e+00  3.891359e-03  000:08:24  000:01:12  D
     354  1.377541e+00  3.891359e-03  000:08:26  000:01:10  D
     355  1.381432e+00  3.891359e-03  000:08:27  000:01:09  D
     356  1.385324e+00  3.891359e-03  000:08:29  000:01:08  D
     357  1.389215e+00  3.891359e-03  000:08:30  000:01:06  D
     358  1.393106e+00  3.891359e-03  000:08:32  000:01:05  D
     359  1.396998e+00  3.891359e-03  000:08:33  000:01:03  D
     360  1.400889e+00  3.891359e-03  000:08:34  000:01:02  FD
     361  1.404780e+00  3.891359e-03  000:08:36  000:01:01  D
     362  1.408672e+00  3.891359e-03  000:08:37  000:00:59  D
     363  1.412563e+00  3.891359e-03  000:08:39  000:00:58  D
     364  1.416455e+00  3.891359e-03  000:08:40  000:00:56  D
     365  1.420346e+00  3.891359e-03  000:08:42  000:00:55  D
     366  1.424237e+00  3.891359e-03  000:08:43  000:00:53  D
     367  1.428129e+00  3.891359e-03  000:08:44  000:00:52  D
     368  1.432020e+00  3.891359e-03  000:08:46  000:00:51  D
     369  1.435911e+00  3.891359e-03  000:08:47  000:00:49  D
     370  1.439803e+00  3.891359e-03  000:08:49  000:00:48  FD
     371  1.443694e+00  3.891359e-03  000:08:50  000:00:46  D
     372  1.447585e+00  3.891359e-03  000:08:51  000:00:45  D
     373  1.451477e+00  3.891359e-03  000:08:53  000:00:43  D
     374  1.455368e+00  3.891359e-03  000:08:54  000:00:42  D
     375  1.459259e+00  3.891359e-03  000:08:56  000:00:40  D
     376  1.463151e+00  3.891359e-03  000:08:57  000:00:39  D
     377  1.467042e+00  3.891359e-03  000:08:59  000:00:38  D
     378  1.470934e+00  3.891359e-03  000:09:00  000:00:36  D
     379  1.474825e+00  3.891359e-03  000:09:01  000:00:35  D
     380  1.478716e+00  3.891359e-03  000:09:03  000:00:33  FD
     381  1.482608e+00  3.891359e-03  000:09:04  000:00:32  D
     382  1.486499e+00  3.891359e-03  000:09:06  000:00:30  D
     383  1.490390e+00  3.891359e-03  000:09:07  000:00:29  D
     384  1.494282e+00  3.891359e-03  000:09:08  000:00:28  D
     385  1.498173e+00  3.891359e-03  000:09:10  000:00:26  D
     386  1.502064e+00  3.891359e-03  000:09:11  000:00:25  D
     387  1.505956e+00  3.891359e-03  000:09:13  000:00:23  D
     388  1.509847e+00  3.891359e-03  000:09:14  000:00:22  D
     389  1.513738e+00  3.891359e-03  000:09:16  000:00:20  D
     390  1.517630e+00  3.891359e-03  000:09:17  000:00:19  FD
     391  1.521521e+00  3.891359e-03  000:09:18  000:00:18  D
     392  1.525413e+00  3.891359e-03  000:09:20  000:00:16  D
     393  1.529304e+00  3.891359e-03  000:09:21  000:00:15  D
     394  1.533195e+00  3.891359e-03  000:09:23  000:00:13  D
     395  1.537087e+00  3.891359e-03  000:09:24  000:00:12  D
     396  1.540978e+00  3.891359e-03  000:09:26  000:00:10  D
     397  1.544869e+00  3.891359e-03  000:09:27  000:00:09  D
     398  1.548761e+00  3.891359e-03  000:09:29  000:00:08  D
     399  1.552652e+00  3.891359e-03  000:09:30  000:00:06  D
     400  1.556543e+00  3.891359e-03  000:09:32  000:00:05  FD
     401  1.560435e+00  3.891359e-03  000:09:33  000:00:03  D
     402  1.564326e+00  3.891359e-03  000:09:35  000:00:02  D
     403  1.568218e+00  3.891359e-03  000:09:36  000:00:00  D
     404  1.570796e+00  2.578819e-03  000:09:37  000:00:00  D

     Normal finish, maximum time reached: 1.570796

 * Timers (h:m:s):
 -----------------
     Migrate global-scope data                                                   : 0:0:0
     Total runtime                                                               : 0:9:42

[Partition 0][Node 0] End of program
$ cp diag diag.6M
$ ./charmrun +p36 Main/inciter -v -c slot_cyl.q -i unitcube_01_48M.exo

Running on 36 processors:  Main/inciter -v -c slot_cyl.q -i unitcube_01_48M.exo
charmrun>  /usr/bin/setarch x86_64 -R  mpirun -np 36  Main/inciter -v -c slot_cyl.q -i unitcube_01_48M.exo
Charm++> Running on MPI version: 3.1
Charm++> level of thread support used: MPI_THREAD_SINGLE (desired: MPI_THREAD_SINGLE)
Charm++> Running in non-SMP mode: numPes 36
Converse/Charm++ Commit ID:
CharmLB> Load balancer assumes all CPUs are same.
Charm++> Running on 1 unique compute nodes (36-way SMP).
Charm++> cpu topology info is gathered in 0.022 seconds.

      ,::,`                                                            `.
   .;;;'';;;:                                                          ;;#
  ;;;@+   +;;;  ;;;;;,   ;;;;. ;;;;;, ;;;;      ;;;;   `;;;;;;:        ;;;
 :;;@`     :;;' .;;;@,    ,;@, ,;;;@: .;;;'     .;+;. ;;;@#:';;;      ;;;;'
 ;;;#       ;;;: ;;;'      ;:   ;;;'   ;;;;;     ;#  ;;;@     ;;;     ;+;;'
.;;+        ;;;# ;;;'      ;:   ;;;'   ;#;;;`    ;#  ;;@      `;;+   .;#;;;.
;;;#        :;;' ;;;'      ;:   ;;;'   ;# ;;;    ;# ;;;@       ;;;   ;# ;;;+
;;;#        .;;; ;;;'      ;:   ;;;'   ;# ,;;;   ;# ;;;#       ;;;:  ;@  ;;;
;;;#        .;;' ;;;'      ;:   ;;;'   ;#  ;;;;  ;# ;;;'       ;;;+ ;',  ;;;@
;;;+        ,;;+ ;;;'      ;:   ;;;'   ;#   ;;;' ;# ;;;'       ;;;' ;':::;;;;
`;;;        ;;;@ ;;;'      ;:   ;;;'   ;#    ;;;';# ;;;@       ;;;:,;+++++;;;'
 ;;;;       ;;;@ ;;;#     .;.   ;;;'   ;#     ;;;;# `;;+       ;;# ;#     ;;;'
 .;;;      :;;@  ,;;+     ;+    ;;;'   ;#      ;;;#  ;;;      ;;;@ ;@      ;;;.
  ';;;    ;;;@,   ;;;;``.;;@    ;;;'   ;+      .;;#   ;;;    :;;@ ;;;      ;;;+
   :;;;;;;;+@`     ';;;;;'@    ;;;;;, ;;;;      ;;+    +;;;;;;#@ ;;;;.   .;;;;;;
     .;;#@'         `#@@@:     ;::::; ;::::      ;@      '@@@+   ;:::;    ;::::::
    :;;;;;;.     .___              .__  __
   .;@+@';;;;;;' |   | ____   ____ |__|/  |_  ___________
    `     '#''@` |   |/    \_/ ___\|  \   __\/ __ \_  __ \
                 |   |   |  \  \___|  ||  | \  ___/|  | \/
                 |___|___|  /\___  >__||__|  \___  >__|
                          \/     \/              \/

                                 < ENVIRONMENT >
                                 ------ o ------

 * Build environment:
 --------------------
     Hostname                       : lagrange
     Executable                     : inciter
     Version                        : 0.1 (C16015)
     Revision SHA1                  : Quinoa_v0.1-914-g40abfa98
     CMake build type               : RELEASE
     Asserts                        : off (turn on: CMAKE_BUILD_TYPE=DEBUG)
     Exception trace                : off (turn on: CMAKE_BUILD_TYPE=DEBUG)
     MPI C++ wrapper                : /usr/bin/mpicxx
     Underlying C++ compiler        : /usr/bin/g++
     Build date                     : Sun Jun  4 13:51:45 MDT 2017

 * Run-time environment:
 -----------------------
     Date, time                     : Mon Jun  5 07:18:32 2017
     Work directory                 : /home/jbakosi/code/quinoa/build/gnu
     Executable (rel. to work dir)  : Main/inciter
     Command line arguments         : '-v -c slot_cyl.q -i unitcube_01_48M.exo'
     Output                         : verbose (quiet: omit -v)
     Control file                   : slot_cyl.q
     Parsed control file            : success


                                   < FACTORY >
                                   ---- o ----

 * Unknowns data layout (CMake: FIELD_DATA_LAYOUT):
 --------------------------------------------------
     unknown-major

 * Registered partial differential equations:
 --------------------------------------------
     Unique equation types          : 2
     With all policy combinations   : 12

     Legend: equation name : supported policies

     Policy codes:
      * h: physics configuration:
        A - Advection
        D - Advection + diffusion
        L - Laplace
        N - Navier-Stokes
        E - Euler
      * r: problem:
        U - User-defined
        S - Shear-diffusion
        D - Dirichlet & Neumann
        V - Vortical flow
        V - Nonlinear energy growth
        V - Rayleigh-Taylor
        Z - Zalesak's slotted cylinder

     Compressible flow              : h:EN, r:UV
     Transport                      : h:AD, r:SZ


                                   < PROBLEM >
                                   ---- o ----

 * Title: Zalesak's slotted cylinder
 -----------------------------------

 * Partial differential equations integrated (1):
 ------------------------------------------------
   < Transport >
     problem                        : Zalesak's slotted cylinder
     start offset in unknowns array : 0
     number of components           : 1

 * Discretization parameters:
 ----------------------------
     Number of time steps           : 18446744073709551615
     Start time                     : 0
     Terminate time                 : 1.5708
     CFL coefficient                : 0.5
     Mass diffusion coeff           : 1

 * Output filenames:
 -------------------
     Field                          : out.<chareid>
     Diagnostics                    : diag

 * Output intervals:
 -------------------
     TTY                            : 1
     Field                          : 10
     Diagnostics                    : 1

Quinoa> Reading side sets ... done
Quinoa> Creating linear system mergers
Quinoa> Creating particle writers
Quinoa> Creating partitioners and reading mesh graph ... done

 * Input mesh graph statistics:
 ------------------------------
     Number of tetrahedra           : 48000000
     Number of nodes                : 8120601

 * Load distribution:
 --------------------
     Virtualization [0.0...1.0]     : 0
     Load (number of tetrahedra)    : 48000000
     Number of processing elements  : 36
     Number of work units           : 36 (35*1333333+1333345)

 * Initial mesh partitioning:
 ----------------------------
     Mesh partitioning algorithm    : recursive coordinate bisection

Quinoa> Mesh read time: 1.933377 sec
Quinoa> Partitioning and distributing mesh ... ZOLTAN Load balancing method = 3 (RCB)
Build configuration:

  ZOLTAN_ID_TYPE: unsigned int (4 bytes)
  ZOLTAN_GNO_TYPE: ssize_t, (8 bytes)
  MPI_Datatype for ZOLTAN_ID_TYPE: MPI_UNSIGNED
  MPI_Datatype for ZOLTAN_GNO_TYPE: MPI_LONG

ZOLTAN Parameter IMBALANCE_TOL[0] = 1.100000
ZOLTAN Parameter AUTO_MIGRATE = FALSE
ZOLTAN Parameter MIGRATE_ONLY_PROC_CHANGES = 1
ZOLTAN Parameter OBJ_WEIGHT_DIM = 0
ZOLTAN Parameter EDGE_WEIGHT_DIM = 0
ZOLTAN Parameter DEBUG_LEVEL = 1
ZOLTAN Parameter DEBUG_PROCESSOR = 0
ZOLTAN Parameter DETERMINISTIC = TRUE
ZOLTAN Parameter TIMER = 1 (wall)
ZOLTAN Parameter NUM_GID_ENTRIES = 2
ZOLTAN Parameter NUM_LID_ENTRIES = 2
ZOLTAN Parameter RETURN_LISTS = PARTITION ASSIGNMENTS
ZOLTAN Parameter NUM_GLOBAL_PARTS = 36
ZOLTAN Parameter NUM_LOCAL_PARTS = -1
ZOLTAN Parameter REMAP = 1
ZOLTAN Parameter SEED = 123456789 (123456789)
ZOLTAN Parameter LB_APPROACH = repartition
ZOLTAN Parameter RCB_OVERALLOC = 1.200000
ZOLTAN Parameter RCB_REUSE = 0
ZOLTAN Parameter CHECK_GEOM = 1
ZOLTAN Parameter RCB_OUTPUT_LEVEL = 0
ZOLTAN Parameter KEEP_CUTS = 0
ZOLTAN Parameter RCB_LOCK_DIRECTIONS = 0
ZOLTAN Parameter RCB_SET_DIRECTIONS = 0
ZOLTAN Parameter RCB_RECTILINEAR_BLOCKS = 0
ZOLTAN Parameter OBJ_WEIGHTS_COMPARABLE = 0
ZOLTAN Parameter RCB_MULTICRITERIA_NORM = 1
ZOLTAN Parameter RCB_MAX_ASPECT_RATIO = 10.000000
ZOLTAN Parameter AVERAGE_CUTS = 0
ZOLTAN Parameter RANDOM_PIVOTS = 0
ZOLTAN Parameter RCB_RECOMPUTE_BOX = 0
ZOLTAN Parameter REDUCE_DIMENSIONS = 0
ZOLTAN Parameter DEGENERATE_RATIO = 0.000000
ZOLTAN Parameter FINAL_OUTPUT = 0
ZOLTAN Parameter KEEP_CUTS = 0
ZOLTAN Parameter REDUCE_DIMENSIONS = 0
ZOLTAN Parameter DEGENERATE_RATIO = 10.000000
done
Quinoa> Reordering mesh ... done
Quinoa> Creating workers
Quinoa> Reading mesh node coordinates, computing nodal volumes
Quinoa> Linear system communication cost: avg = 0.044557, std = 0.026130
Quinoa> Mesh statistics: min/max/avg(edgelength) = 0.005000 / 0.008660 / 0.006397
Quinoa> Mesh statistics: min/max/avg(V^{1/3}) = 0.002752 / 0.002752 / 0.002752
Quinoa> Computing row IDs, querying BCs, outputting mesh done
Quinoa> Setting and outputting ICs, computing initial dt, computing LHS ... done
Quinoa> Starting time stepping ...

 * Time integration: Unstructured-mesh PDE solver testbed
 --------------------------------------------------------
     Legend: it - iteration count
              t - time
             dt - time step size
            ETE - estimated time elapsed (h:m:s)
            ETA - estimated time for accomplishment (h:m:s)
            out - output-saved flags (F: field, D: diagnostics)

      it             t            dt        ETE        ETA   out
 ---------------------------------------------------------------
       1  1.945679e-03  1.945679e-03  000:00:10  002:23:17  D
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     683  1.328899e+00  1.945679e-03  002:09:29  000:23:34  D
     684  1.330845e+00  1.945679e-03  002:09:40  000:23:22  D
     685  1.332790e+00  1.945679e-03  002:09:51  000:23:11  D
     686  1.334736e+00  1.945679e-03  002:10:02  000:22:59  D
     687  1.336682e+00  1.945679e-03  002:10:13  000:22:48  D
     688  1.338627e+00  1.945679e-03  002:10:24  000:22:37  D
     689  1.340573e+00  1.945679e-03  002:10:35  000:22:25  D
     690  1.342519e+00  1.945679e-03  002:10:46  000:22:14  FD
     691  1.344464e+00  1.945679e-03  002:10:58  000:22:02  D
     692  1.346410e+00  1.945679e-03  002:11:09  000:21:51  D
     693  1.348356e+00  1.945679e-03  002:11:20  000:21:40  D
     694  1.350301e+00  1.945679e-03  002:11:31  000:21:28  D
     695  1.352247e+00  1.945679e-03  002:11:42  000:21:17  D
     696  1.354193e+00  1.945679e-03  002:11:53  000:21:05  D
     697  1.356138e+00  1.945679e-03  002:12:04  000:20:54  D
     698  1.358084e+00  1.945679e-03  002:12:15  000:20:42  D
     699  1.360030e+00  1.945679e-03  002:12:27  000:20:31  D
     700  1.361976e+00  1.945679e-03  002:12:38  000:20:20  FD
     701  1.363921e+00  1.945679e-03  002:12:49  000:20:08  D
     702  1.365867e+00  1.945679e-03  002:13:01  000:19:57  D
     703  1.367813e+00  1.945679e-03  002:13:12  000:19:46  D
     704  1.369758e+00  1.945679e-03  002:13:23  000:19:34  D
     705  1.371704e+00  1.945679e-03  002:13:34  000:19:23  D
     706  1.373650e+00  1.945679e-03  002:13:45  000:19:11  D
     707  1.375595e+00  1.945679e-03  002:13:57  000:19:00  D
     708  1.377541e+00  1.945679e-03  002:14:09  000:18:49  D
     709  1.379487e+00  1.945679e-03  002:14:20  000:18:37  D
     710  1.381432e+00  1.945679e-03  002:14:31  000:18:26  FD
     711  1.383378e+00  1.945679e-03  002:14:42  000:18:15  D
     712  1.385324e+00  1.945679e-03  002:14:54  000:18:03  D
     713  1.387269e+00  1.945679e-03  002:15:05  000:17:52  D
     714  1.389215e+00  1.945679e-03  002:15:16  000:17:40  D
     715  1.391161e+00  1.945679e-03  002:15:27  000:17:29  D
     716  1.393106e+00  1.945679e-03  002:15:38  000:17:18  D
     717  1.395052e+00  1.945679e-03  002:15:50  000:17:06  D
     718  1.396998e+00  1.945679e-03  002:16:01  000:16:55  D
     719  1.398943e+00  1.945679e-03  002:16:12  000:16:43  D
     720  1.400889e+00  1.945679e-03  002:16:24  000:16:32  FD
     721  1.402835e+00  1.945679e-03  002:16:35  000:16:21  D
     722  1.404780e+00  1.945679e-03  002:16:46  000:16:09  D
     723  1.406726e+00  1.945679e-03  002:16:57  000:15:58  D
     724  1.408672e+00  1.945679e-03  002:17:09  000:15:47  D
     725  1.410617e+00  1.945679e-03  002:17:20  000:15:35  D
     726  1.412563e+00  1.945679e-03  002:17:31  000:15:24  D
     727  1.414509e+00  1.945679e-03  002:17:42  000:15:12  D
     728  1.416455e+00  1.945679e-03  002:17:53  000:15:01  D
     729  1.418400e+00  1.945679e-03  002:18:04  000:14:50  D
     730  1.420346e+00  1.945679e-03  002:18:15  000:14:38  FD
     731  1.422292e+00  1.945679e-03  002:18:25  000:14:27  D
     732  1.424237e+00  1.945679e-03  002:18:37  000:14:15  D
     733  1.426183e+00  1.945679e-03  002:18:48  000:14:04  D
     734  1.428129e+00  1.945679e-03  002:19:00  000:13:53  D
     735  1.430074e+00  1.945679e-03  002:19:11  000:13:41  D
     736  1.432020e+00  1.945679e-03  002:19:22  000:13:30  D
     737  1.433966e+00  1.945679e-03  002:19:34  000:13:19  D
     738  1.435911e+00  1.945679e-03  002:19:46  000:13:07  D
     739  1.437857e+00  1.945679e-03  002:19:56  000:12:56  D
     740  1.439803e+00  1.945679e-03  002:20:08  000:12:45  FD
     741  1.441748e+00  1.945679e-03  002:20:19  000:12:33  D
     742  1.443694e+00  1.945679e-03  002:20:30  000:12:22  D
     743  1.445640e+00  1.945679e-03  002:20:41  000:12:10  D
     744  1.447585e+00  1.945679e-03  002:20:52  000:11:59  D
     745  1.449531e+00  1.945679e-03  002:21:03  000:11:48  D
     746  1.451477e+00  1.945679e-03  002:21:15  000:11:36  D
     747  1.453422e+00  1.945679e-03  002:21:27  000:11:25  D
     748  1.455368e+00  1.945679e-03  002:21:38  000:11:14  D
     749  1.457314e+00  1.945679e-03  002:21:49  000:11:02  D
     750  1.459259e+00  1.945679e-03  002:22:00  000:10:51  FD
     751  1.461205e+00  1.945679e-03  002:22:11  000:10:39  D
     752  1.463151e+00  1.945679e-03  002:22:22  000:10:28  D
     753  1.465097e+00  1.945679e-03  002:22:33  000:10:17  D
     754  1.467042e+00  1.945679e-03  002:22:44  000:10:05  D
     755  1.468988e+00  1.945679e-03  002:22:55  000:09:54  D
     756  1.470934e+00  1.945679e-03  002:23:06  000:09:42  D
     757  1.472879e+00  1.945679e-03  002:23:17  000:09:31  D
     758  1.474825e+00  1.945679e-03  002:23:28  000:09:20  D
     759  1.476771e+00  1.945679e-03  002:23:39  000:09:08  D
     760  1.478716e+00  1.945679e-03  002:23:50  000:08:57  FD
     761  1.480662e+00  1.945679e-03  002:24:01  000:08:46  D
     762  1.482608e+00  1.945679e-03  002:24:12  000:08:34  D
     763  1.484553e+00  1.945679e-03  002:24:23  000:08:23  D
     764  1.486499e+00  1.945679e-03  002:24:35  000:08:11  D
     765  1.488445e+00  1.945679e-03  002:24:47  000:08:00  D
     766  1.490390e+00  1.945679e-03  002:24:57  000:07:49  D
     767  1.492336e+00  1.945679e-03  002:25:09  000:07:37  D
     768  1.494282e+00  1.945679e-03  002:25:20  000:07:26  D
     769  1.496227e+00  1.945679e-03  002:25:31  000:07:15  D
     770  1.498173e+00  1.945679e-03  002:25:43  000:07:03  FD
     771  1.500119e+00  1.945679e-03  002:25:55  000:06:52  D
     772  1.502064e+00  1.945679e-03  002:26:06  000:06:41  D
     773  1.504010e+00  1.945679e-03  002:26:17  000:06:29  D
     774  1.505956e+00  1.945679e-03  002:26:30  000:06:18  D
     775  1.507901e+00  1.945679e-03  002:26:43  000:06:07  D
     776  1.509847e+00  1.945679e-03  002:26:55  000:05:55  D
     777  1.511793e+00  1.945679e-03  002:27:07  000:05:44  D
     778  1.513738e+00  1.945679e-03  002:27:22  000:05:33  D
     779  1.515684e+00  1.945679e-03  002:27:35  000:05:21  D
     780  1.517630e+00  1.945679e-03  002:27:47  000:05:10  FD
     781  1.519576e+00  1.945679e-03  002:27:57  000:04:59  D
     782  1.521521e+00  1.945679e-03  002:28:10  000:04:47  D
     783  1.523467e+00  1.945679e-03  002:28:21  000:04:36  D
     784  1.525413e+00  1.945679e-03  002:28:32  000:04:25  D
     785  1.527358e+00  1.945679e-03  002:28:44  000:04:13  D
     786  1.529304e+00  1.945679e-03  002:28:55  000:04:02  D
     787  1.531250e+00  1.945679e-03  002:29:06  000:03:51  D
     788  1.533195e+00  1.945679e-03  002:29:17  000:03:39  D
     789  1.535141e+00  1.945679e-03  002:29:28  000:03:28  D
     790  1.537087e+00  1.945679e-03  002:29:40  000:03:16  FD
     791  1.539032e+00  1.945679e-03  002:29:51  000:03:05  D
     792  1.540978e+00  1.945679e-03  002:30:02  000:02:54  D
     793  1.542924e+00  1.945679e-03  002:30:13  000:02:42  D
     794  1.544869e+00  1.945679e-03  002:30:24  000:02:31  D
     795  1.546815e+00  1.945679e-03  002:30:35  000:02:20  D
     796  1.548761e+00  1.945679e-03  002:30:47  000:02:08  D
     797  1.550706e+00  1.945679e-03  002:30:58  000:01:57  D
     798  1.552652e+00  1.945679e-03  002:31:10  000:01:45  D
     799  1.554598e+00  1.945679e-03  002:31:22  000:01:34  D
     800  1.556543e+00  1.945679e-03  002:31:33  000:01:23  FD
     801  1.558489e+00  1.945679e-03  002:31:44  000:01:11  D
     802  1.560435e+00  1.945679e-03  002:31:56  000:01:00  D
     803  1.562380e+00  1.945679e-03  002:32:07  000:00:49  D
     804  1.564326e+00  1.945679e-03  002:32:18  000:00:37  D
     805  1.566272e+00  1.945679e-03  002:32:29  000:00:26  D
     806  1.568218e+00  1.945679e-03  002:32:41  000:00:15  D
     807  1.570163e+00  1.945679e-03  002:32:52  000:00:03  D
     808  1.570796e+00  6.331393e-04  002:33:03  000:00:00  D

     Normal finish, maximum time reached: 1.570796

 * Timers (h:m:s):
 -----------------
     Migrate global-scope data                                                   : 0:0:0
     Total runtime                                                               : 2:33:54

[Partition 0][Node 0] End of program
$ cp diag diag.48M

Example visualization

Example visualization of the 3D field data result with ParaView.

paraview out.0

L2 errors

The following figure shows the time evolution of the $L_2$ error for three different meshes whose edge lengths are successively halved, which indicates approximately second-order convergence. See also https://github.com/quinoacomputing/quinoa-examples/tree/master/inciter/Hump for the diagnostics files.

Image

Gnuplot commands to reproduce the above plot:

plot "diag.750K" u 2:4, "diag.6M" u 2:4, "diag.48M" u 2:4