Quinoa unit test code coverage report
Current view: top level - RNG - RNGSSE.hpp (source / functions) Hit Total Coverage
Commit: Quinoa_v0.3-957-gb4f0efae0 Lines: 42 46 91.3 %
Date: 2021-11-09 12:13:43 Functions: 77 88 87.5 %
Legend: Lines: hit not hit | Branches: + taken - not taken # not executed Branches: 101 140 72.1 %

           Branch data     Line data    Source code
       1                 :            : // *****************************************************************************
       2                 :            : /*!
       3                 :            :   \file      src/RNG/RNGSSE.hpp
       4                 :            :   \copyright 2012-2015 J. Bakosi,
       5                 :            :              2016-2018 Los Alamos National Security, LLC.,
       6                 :            :              2019-2021 Triad National Security, LLC.
       7                 :            :              All rights reserved. See the LICENSE file for details.
       8                 :            :   \brief     Interface to RNGSSE random number generators
       9                 :            :   \details   Interface to RNGSSE random number generators
      10                 :            : */
      11                 :            : // *****************************************************************************
      12                 :            : #ifndef RNGSSE_h
      13                 :            : #define RNGSSE_h
      14                 :            : 
      15                 :            : #include <cstring>
      16                 :            : #include <random>
      17                 :            : #include <memory>
      18                 :            : 
      19                 :            : #include "NoWarning/beta_distribution.hpp"
      20                 :            : #include <boost/random/gamma_distribution.hpp>
      21                 :            : 
      22                 :            : #include "Exception.hpp"
      23                 :            : #include "Macro.hpp"
      24                 :            : #include "Options/RNGSSESeqLen.hpp"
      25                 :            : 
      26                 :            : namespace tk {
      27                 :            : 
      28                 :            : //! RNGSSE-based random number generator used polymorphically with tk::RNG
      29                 :            : template< class State, typename SeqNumType, unsigned int (*Generate)(State*) >
      30 [ -  + ][ -  + ]:         44 : class RNGSSE {
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      31                 :            : 
      32                 :            :   private:
      33                 :            :     using InitFn = void (*)( State*, SeqNumType );
      34                 :            :     using ncomp_t = kw::ncomp::info::expect::type;    
      35                 :            : 
      36                 :            :     //! Adaptor to use a std distribution with the RNGSSE generator
      37                 :            :     //! \see C++ concepts: UniformRandomNumberGenerator
      38                 :            :     struct Adaptor {
      39                 :            :       using result_type = unsigned int;
      40                 :        792 :       Adaptor( const std::unique_ptr< State[] >& s, int t ) : str(s), tid(t) {}
      41                 :            :       static constexpr result_type min() { return 0u; }
      42                 :            :       static constexpr result_type max() { return 4294967295u; }
      43                 :            :       result_type operator()()
      44                 :   50508948 :       { return Generate( &str[ static_cast<std::size_t>(tid) ] ); }
      45                 :            :       const std::unique_ptr< State[] >& str;
      46                 :            :       int tid;
      47                 :            :     };
      48                 :            : 
      49                 :            :   public:
      50                 :            :     //! Constructor
      51                 :            :     //! \param[in] n Initialize RNG using this many independent streams
      52                 :            :     //! \param[in] fnShort RNG initializer function for short streams
      53                 :            :     //! \param[in] seqlen Sequence length enum: short, medium or long
      54                 :            :     //! \param[in] fnLong RNG initializer function for long streams
      55                 :            :     //! \param[in] fnMed RNG initializer function for medium streams
      56                 :        979 :     explicit RNGSSE( SeqNumType n,
      57                 :            :                      InitFn fnShort,
      58                 :            :                      ctr::RNGSSESeqLenType seqlen = ctr::RNGSSESeqLenType::SHORT,
      59                 :            :                      InitFn fnLong = nullptr,
      60                 :            :                      InitFn fnMed = nullptr) :
      61                 :            :        m_nthreads( n ),
      62                 :        979 :        m_init( seqlen == ctr::RNGSSESeqLenType::LONG ? fnLong :
      63         [ +  - ]:        979 :                seqlen == ctr::RNGSSESeqLenType::MEDIUM ? fnMed : fnShort ),
      64 [ +  - ][ +  - ]:       1958 :        m_stream()
      65                 :            :     {
      66                 :            :       Assert( m_init != nullptr, "nullptr passed to RNGSSE constructor" );
      67                 :            :       Assert( n > 0, "Need at least one thread" );
      68                 :            :       // Allocate array of stream-pointers for threads
      69         [ +  - ]:       1958 :       m_stream = std::make_unique< State[] >( n );
      70                 :            :       // Initialize thread-streams
      71 [ +  + ][ +  - ]:       4851 :       for (SeqNumType i=0; i<n; ++i) m_init( &m_stream[i], i );
      72                 :        979 :     }
      73                 :            : 
      74                 :            :     //! Uniform RNG: Generate uniform random numbers
      75                 :            :     //! \param[in] tid Thread (or more precisely) stream ID
      76                 :            :     //! \param[in] num Number of RNGs to generate
      77                 :            :     //! \param[in,out] r Pointer to memory to write the random numbers to
      78                 :         88 :     void uniform( int tid, ncomp_t num, double* r ) const {
      79         [ +  + ]:    2200088 :       for (ncomp_t i=0; i<num; ++i)
      80                 :    2200000 :         r[i] = static_cast<double>(
      81                 :    2200000 :                  Generate( &m_stream[ static_cast<std::size_t>(tid) ] ) )
      82                 :    2200000 :                / 4294967296.0;
      83                 :         88 :     }
      84                 :            : 
      85                 :            :     //! Gaussian RNG: Generate Gaussian random numbers
      86                 :            :     //! \param[in] tid Thread (or more precisely stream) ID
      87                 :            :     //! \param[in] num Number of RNGs to generate
      88                 :            :     //! \param[in,out] r Pointer to memory to write the random numbers to
      89                 :            :     //! \details Generating Gaussian random numbers is implemented via an
      90                 :            :     //!   adaptor, modeling std::UniformRandomNumberGenerator, outsourcing the
      91                 :            :     //!   transformation of uniform random numbers to Gaussian ones, to the
      92                 :            :     //!   standard library. The adaptor is instantiated here because a standard
      93                 :            :     //!   distribution, such as e.g., std::normal_distribution, generates
      94                 :            :     //!   numbers using operator() with no arguments, thus the RNG state and the
      95                 :            :     //!   thread ID (this latter only known here) must be stored in the adaptor
      96                 :            :     //!   functor's state. Even though creating the adaptor seems like a
      97                 :            :     //!   potentially costly operation for every call, using the standard
      98                 :            :     //!   library implementation is still faster than a hand-coded
      99                 :            :     //!   implementation of the Box-Muller algorithm. Note that libc++ uses a
     100                 :            :     //!   cache, as Box-Muller, implemented using the polar algorithm generates
     101                 :            :     //!   2 Gaussian numbers for each pair of uniform ones, caching every 2nd.
     102                 :        616 :     void gaussian( int tid, ncomp_t num, double* r ) const {
     103                 :        616 :       Adaptor generator( m_stream, tid );
     104                 :            :       std::normal_distribution<> gauss_dist( 0.0, 1.0 );
     105         [ +  + ]:   15400616 :       for (ncomp_t i=0; i<num; ++i) r[i] = gauss_dist( generator );
     106                 :        616 :     }
     107                 :            : 
     108                 :            :     //! \brief Multi-variate Gaussian RNG: Generate multi-variate Gaussian
     109                 :            :     //!    random numbers
     110                 :            :     //! \param[in] tid Thread (or more precisely stream) ID
     111                 :            :     //! \param[in] num Number of RNGs to generate
     112                 :            :     //! \param[in] d Dimension d ( d ≥ 1) of output random vectors
     113                 :            :     //! \param[in] mean Mean vector of dimension d
     114                 :            :     //! \param[in] cov Lower triangle of covariance matrix, stored as a vector
     115                 :            :     //!   of length d(d+1)/2
     116                 :            :     //! \param[in,out] r Pointer to memory to write the random numbers to
     117                 :            :     //! \warning Not implemented!
     118                 :            :     void gaussianmv( [[maybe_unused]] int tid,
     119                 :            :                      [[maybe_unused]] ncomp_t num,
     120                 :            :                      [[maybe_unused]] ncomp_t d,
     121                 :            :                      [[maybe_unused]] const double* const mean,
     122                 :            :                      [[maybe_unused]] const double* const cov,
     123                 :            :                      [[maybe_unused]] double* r ) const
     124                 :            :     {
     125                 :            :     }
     126                 :            : 
     127                 :            :     //! Beta RNG: Generate beta random numbers
     128                 :            :     //! \param[in] tid Thread (or more precisely stream) ID
     129                 :            :     //! \param[in] num Number of RNGs to generate
     130                 :            :     //! \param[in] p First beta shape parameter
     131                 :            :     //! \param[in] q Second beta shape parameter
     132                 :            :     //! \param[in] a Beta displacement parameter
     133                 :            :     //! \param[in] b Beta scale factor
     134                 :            :     //! \param[in,out] r Pointer to memory to write the random numbers to
     135                 :            :     //! \details Generating beta-distributed random numbers is implemented via
     136                 :            :     //!   an adaptor, modeling boost::UniformRandomNumberGenerator, outsourcing
     137                 :            :     //!   the transformation of uniform random numbers to beta-distributed ones,
     138                 :            :     //!   to boost::random. The adaptor is instantiated here because a boost
     139                 :            :     //!   random number distribution, such as e.g.,
     140                 :            :     //!   boost::random::beta_distribution, generates numbers using operator()
     141                 :            :     //!   with no arguments, thus the RNG state and the thread ID (this latter
     142                 :            :     //!   only known here) must be stored in the adaptor functor's state.
     143                 :            :     void beta( int tid, ncomp_t num, double p, double q, double a, double b,
     144                 :            :                double* r ) const {
     145                 :        176 :       Adaptor generator( m_stream, tid );
     146                 :            :       boost::random::beta_distribution<> beta_dist( p, q );
     147 [ +  + ][ +  + ]:    4400176 :       for (ncomp_t i=0; i<num; ++i) r[i] = beta_dist( generator ) * b + a;
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     148                 :            :     }
     149                 :            : 
     150                 :            :     //! Gamma RNG: Generate gamma random numbers
     151                 :            :     //! \param[in] tid Thread (or more precisely stream) ID
     152                 :            :     //! \param[in] num Number of RNGs to generate
     153                 :            :     //! \param[in] a Gamma shape parameter
     154                 :            :     //! \param[in] b Gamma scale factor
     155                 :            :     //! \param[in,out] r Pointer to memory to write the random numbers to
     156                 :            :     //! \details Generating gamma-distributed random numbers is implemented via
     157                 :            :     //!   an adaptor, modeling boost::UniformRandomNumberGenerator, outsourcing
     158                 :            :     //!   the transformation of uniform random numbers to gamma-distributed
     159                 :            :     //!   ones, to boost::random. The adaptor is instantiated here because a
     160                 :            :     //!   boost random number distribution, such as e.g.,
     161                 :            :     //!   boost::random::gamma_distribution, generates numbers using operator()
     162                 :            :     //!   with no arguments, thus the RNG state and the thread ID (this latter
     163                 :            :     //!   only known here) must be stored in the adaptor functor's state.
     164                 :          0 :     void gamma( int tid, ncomp_t num, double a, double b, double* r ) const {
     165                 :          0 :       Adaptor generator( m_stream, tid );
     166                 :            :       boost::random::gamma_distribution<> gamma_dist( a, b );
     167         [ -  - ]:          0 :       for (ncomp_t i=0; i<num; ++i) r[i] = gamma_dist( generator );
     168                 :          0 :     }
     169                 :            : 
     170                 :            :     //! Copy assignment
     171                 :        110 :     RNGSSE& operator=( const RNGSSE& x ) {
     172                 :        110 :       m_nthreads = x.m_nthreads;
     173                 :        110 :       m_init = x.m_init;
     174                 :        220 :       m_stream = std::make_unique< State[] >( x.m_nthreads );
     175         [ +  + ]:        550 :       for (SeqNumType i=0; i<x.m_nthreads; ++i) m_init( &m_stream[i], i );
     176                 :        110 :       return *this;
     177                 :            :     }
     178                 :            : 
     179                 :            :     //! Copy constructor: in terms of copy assignment
     180         [ +  - ]:         99 :     RNGSSE( const RNGSSE& x ) { operator=(x); }
     181                 :            : 
     182                 :            :     //! Move assignment
     183                 :       2684 :     RNGSSE& operator=( RNGSSE&& x ) {
     184                 :       2684 :       m_nthreads = x.m_nthreads;
     185                 :       2684 :       m_init = x.m_init;
     186                 :       5368 :       m_stream = std::make_unique< State[] >( x.m_nthreads );
     187         [ +  + ]:      13420 :       for (SeqNumType i=0; i<x.m_nthreads; ++i) {
     188                 :      10736 :         m_stream[i] = x.m_stream[i];
     189                 :      10736 :         std::memset( &x.m_stream[i], 0, sizeof(x.m_stream[i]) );
     190                 :            :       }
     191                 :       2684 :       x.m_nthreads = 0;
     192         [ +  - ]:       2684 :       x.m_init = nullptr;
     193                 :            :       x.m_stream.reset( nullptr );
     194                 :       2684 :       return *this;
     195                 :            :     }
     196                 :            : 
     197                 :            :     //! Move constructor: in terms of move assignment
     198                 :       2684 :     RNGSSE( RNGSSE&& x ) :
     199                 :            :       m_nthreads( 0 ),
     200                 :            :       m_init( nullptr ),
     201         [ +  - ]:       2684 :       m_stream( nullptr )
     202         [ +  - ]:       2684 :     { *this = std::move( x ); }
     203                 :            : 
     204                 :            :     //! Accessor to the number of threads we operate on
     205                 :            :     SeqNumType nthreads() const noexcept { return m_nthreads; }
     206                 :            : 
     207                 :            :   private:
     208                 :            :     SeqNumType m_nthreads;                 //!< Number of threads
     209                 :            :     InitFn m_init;                         //!< Sequence length initializer
     210                 :            :     std::unique_ptr< State[] > m_stream;   //!< Random number stream for threads
     211                 :            : };
     212                 :            : 
     213                 :            : } // tk::
     214                 :            : 
     215                 :            : #endif // RNGSSE_h

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