Quinoa all test code coverage report
Current view: top level - DiffEq/WrightFisher - WrightFisherCoeffPolicy.hpp (source / functions) Hit Total Coverage
Commit: Quinoa_v0.3-957-gb4f0efae0 Lines: 2 2 100.0 %
Date: 2021-11-11 18:25:50 Functions: 1 1 100.0 %
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           Branch data     Line data    Source code
       1                 :            : // *****************************************************************************
       2                 :            : /*!
       3                 :            :   \file      src/DiffEq/WrightFisher/WrightFisherCoeffPolicy.hpp
       4                 :            :   \copyright 2012-2015 J. Bakosi,
       5                 :            :              2016-2018 Los Alamos National Security, LLC.,
       6                 :            :              2019-2021 Triad National Security, LLC.
       7                 :            :              All rights reserved. See the LICENSE file for details.
       8                 :            :   \brief     Wright-Fisher coefficients policies
       9                 :            :   \details   This file defines coefficients policy classes for the Wright-Fisher
      10                 :            :     SDE, defined in DiffEq/WrightFisher.h.
      11                 :            : 
      12                 :            :     General requirements on the Wright-Fisher SDE coefficients policy classes:
      13                 :            : 
      14                 :            :     - Must define a _constructor_, which is used to initialize the SDE
      15                 :            :       coefficient vector, omega. Required signature:
      16                 :            :       \code{.cpp}
      17                 :            :         CoeffPolicyName(
      18                 :            :           tk::ctr::ncomp_t ncomp,
      19                 :            :           const std::vector< kw::sde_omega::info::expect::type >& omega_,
      20                 :            :           std::vector< kw::sde_omega::info::expect::type >& omega )
      21                 :            :       \endcode
      22                 :            :       where
      23                 :            :       - ncomp denotes the number of scalar components of the system of the
      24                 :            :         Wright-Fisher SDE.
      25                 :            :       - Constant references to omega_ which denote a vector of real values used
      26                 :            :         to initialize the parameter vector of the Wright-Fisher SDE. The length
      27                 :            :         of the vector must be equal to the number of components given by ncomp.
      28                 :            :       - Reference to omega which denote the parameter vector to be initialized
      29                 :            :         based on omega_.
      30                 :            : 
      31                 :            :     - Must define the static function _type()_, returning the enum value of the
      32                 :            :       policy option. Example:
      33                 :            :       \code{.cpp}
      34                 :            :         static ctr::CoeffPolicyType type() noexcept {
      35                 :            :           return ctr::CoeffPolicyType::CONST_COEFF;
      36                 :            :         }
      37                 :            :       \endcode
      38                 :            :       which returns the enum value of the option from the underlying option
      39                 :            :       class, collecting all possible options for coefficients policies.
      40                 :            : */
      41                 :            : // *****************************************************************************
      42                 :            : #ifndef WrightFisherCoeffPolicy_h
      43                 :            : #define WrightFisherCoeffPolicy_h
      44                 :            : 
      45                 :            : #include <brigand/sequences/list.hpp>
      46                 :            : 
      47                 :            : #include "Types.hpp"
      48                 :            : #include "Walker/Options/CoeffPolicy.hpp"
      49                 :            : #include "SystemComponents.hpp"
      50                 :            : 
      51                 :            : namespace walker {
      52                 :            : 
      53                 :            : //! Wright-Fisher constant coefficients policity: constants in time
      54                 :            : class WrightFisherCoeffConst {
      55                 :            : 
      56                 :            :   public:
      57                 :            :     //! Constructor: initialize coefficients
      58                 :            :     WrightFisherCoeffConst(
      59                 :            :       tk::ctr::ncomp_t ncomp,
      60                 :            :       const std::vector< kw::sde_omega::info::expect::type >& omega_,
      61                 :            :       std::vector< kw::sde_omega::info::expect::type >& omega );
      62                 :            : 
      63                 :       2584 :     static ctr::CoeffPolicyType type() noexcept
      64                 :       2584 :     { return ctr::CoeffPolicyType::CONST_COEFF; }
      65                 :            : };
      66                 :            : 
      67                 :            : //! List of all Wright-Fisher's coefficients policies
      68                 :            : using WrightFisherCoeffPolicies = brigand::list< WrightFisherCoeffConst >;
      69                 :            : 
      70                 :            : } // walker::
      71                 :            : 
      72                 :            : #endif // WrightFisherCoeffPolicy_h

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