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       1                 :            : // *****************************************************************************
       2                 :            : /*!
       3                 :            :   \file      src/PDE/MultiSpecies/Problem/FieldOutput.cpp
       4                 :            :   \copyright 2012-2015 J. Bakosi,
       5                 :            :              2016-2018 Los Alamos National Security, LLC.,
       6                 :            :              2019-2021 Triad National Security, LLC.
       7                 :            :              All rights reserved. See the LICENSE file for details.
       8                 :            :   \brief     Field outputs for multi-species equation solver
       9                 :            :   \details   This file defines functions for field quantites to be output to
      10                 :            :     files for compressible multi-species equations.
      11                 :            : */
      12                 :            : // *****************************************************************************
      13                 :            : #include "FieldOutput.hpp"
      14                 :            : #include "MultiSpecies/MultiSpeciesIndexing.hpp"
      15                 :            : #include "Vector.hpp"
      16                 :            : #include "Inciter/InputDeck/InputDeck.hpp"
      17                 :            : #include "ConfigureMultiSpecies.hpp"
      18                 :            : 
      19                 :            : namespace inciter {
      20                 :            : 
      21                 :            : extern ctr::InputDeck g_inputdeck;
      22                 :            : 
      23         [ -  - ]:          0 : std::map< std::string, tk::GetVarFn > MultiSpeciesOutVarFn()
      24                 :            : // *****************************************************************************
      25                 :            : // Return a map that associates user-specified strings to functions
      26                 :            : //! \return Map that associates user-specified strings to functions that compute
      27                 :            : //!   relevant quantities to be output to file
      28                 :            : // *****************************************************************************
      29                 :            : {
      30                 :            :   std::map< std::string, tk::GetVarFn > OutFnMap;
      31                 :            : 
      32                 :            :   // Allowed strings for user-def field output vars
      33 [ -  - ][ -  - ]:          0 :   OutFnMap["density"] = multispecies::mixDensityOutVar;
      34                 :            :   //OutFnMap["pressure"] = multispecies::pressureOutVar;
      35 [ -  - ][ -  - ]:          0 :   OutFnMap["specific_total_energy"] = multispecies::specificTotalEnergyOutVar;
      36 [ -  - ][ -  - ]:          0 :   OutFnMap["x-velocity"] = multispecies::velocityOutVar<0>;
      37 [ -  - ][ -  - ]:          0 :   OutFnMap["y-velocity"] = multispecies::velocityOutVar<1>;
      38 [ -  - ][ -  - ]:          0 :   OutFnMap["z-velocity"] = multispecies::velocityOutVar<2>;
      39                 :            : 
      40                 :          0 :   return OutFnMap;
      41                 :            : }
      42                 :            : 
      43                 :            : std::vector< std::string >
      44                 :          0 : MultiSpeciesFieldNames( std::size_t nspec )
      45                 :            : // *****************************************************************************
      46                 :            : // Return multi-species field names to be output to file
      47                 :            : //! \param[in] nspec Number of species in system
      48                 :            : //! \return Vector of strings labelling fields output in file
      49                 :            : // *****************************************************************************
      50                 :            : {
      51                 :            :   std::vector< std::string > n;
      52                 :            : 
      53         [ -  - ]:          0 :   for (std::size_t k=0; k<nspec; ++k)
      54 [ -  - ][ -  - ]:          0 :     n.push_back( "density"+std::to_string(k+1)+"_numerical" );
         [ -  - ][ -  - ]
         [ -  - ][ -  - ]
                 [ -  - ]
      55         [ -  - ]:          0 :   n.push_back( "x-velocity_numerical" );
      56         [ -  - ]:          0 :   n.push_back( "y-velocity_numerical" );
      57         [ -  - ]:          0 :   n.push_back( "z-velocity_numerical" );
      58         [ -  - ]:          0 :   n.push_back( "pressure_numerical" );
      59         [ -  - ]:          0 :   n.push_back( "soundspeed" );
      60         [ -  - ]:          0 :   n.push_back( "total_energy_density_numerical" );
      61         [ -  - ]:          0 :   n.push_back( "timestep" );
      62                 :            : 
      63                 :          0 :   return n;
      64                 :            : }
      65                 :            : 
      66         [ -  - ]:          0 : std::vector< std::string > MultiSpeciesSurfNames()
      67                 :            : // *****************************************************************************
      68                 :            : //  Return surface field names to be output to file
      69                 :            : //! \note Every surface will output these fields.
      70                 :            : //! \return Vector of strings labelling surface fields output in file
      71                 :            : // *****************************************************************************
      72                 :            : {
      73                 :            :   std::vector< std::string > n;
      74                 :            : 
      75         [ -  - ]:          0 :   n.push_back( "density" );
      76         [ -  - ]:          0 :   n.push_back( "x-velocity" );
      77         [ -  - ]:          0 :   n.push_back( "y-velocity" );
      78         [ -  - ]:          0 :   n.push_back( "z-velocity" );
      79         [ -  - ]:          0 :   n.push_back( "specific_total_energy" );
      80                 :            : 
      81                 :          0 :   return n;
      82                 :            : }
      83                 :            : 
      84                 :            : std::vector< std::vector< tk::real > >
      85                 :          0 : MultiSpeciesSurfOutput(
      86                 :            :   const std::size_t nspec,
      87                 :            :   const std::size_t rdof,
      88                 :            :   const FaceData& fd,
      89                 :            :   const tk::Fields& U,
      90                 :            :   const tk::Fields& /*P*/ )
      91                 :            : // *****************************************************************************
      92                 :            : //  Return element surface field output (on triangle faces) going to file
      93                 :            : //! \param[in] nspec Number of species in this PDE system
      94                 :            : //! \param[in] rdof Maximum number of reconstructed degrees of freedom
      95                 :            : //! \param[in] fd Face connectivity and boundary conditions object
      96                 :            : //! \param[in] U Solution vector at recent time step
      97                 :            : // //! \param[in] P Vector of primitives at recent time step
      98                 :            : //! \return Vector of vectors of solution on side set faces to be output to file
      99                 :            : // *****************************************************************************
     100                 :            : {
     101                 :            :   std::vector< std::vector< tk::real > > out;
     102                 :            : 
     103                 :            :   const auto& bface = fd.Bface();
     104                 :            :   const auto& esuf = fd.Esuf();
     105                 :            : 
     106                 :            :   // extract field output along side sets requested
     107         [ -  - ]:          0 :   for (auto s : g_inputdeck.get< tag::field_output, tag::sideset >()) {
     108                 :            :     // get face list for side set requested
     109                 :          0 :     auto b = bface.find(static_cast<int>(s));
     110         [ -  - ]:          0 :     if (b == end(bface)) continue;
     111                 :            :     const auto& faces = b->second;
     112         [ -  - ]:          0 :     std::vector< tk::real > surfaceSol( faces.size() );
     113         [ -  - ]:          0 :     auto i = out.size();
     114                 :            :     out.insert( end(out), 6, surfaceSol );
     115                 :            :     std::size_t j = 0;
     116         [ -  - ]:          0 :     for (auto f : faces) {
     117                 :            :       Assert( esuf[2*f+1] == -1, "outside boundary element not -1" );
     118                 :          0 :       std::size_t el = static_cast< std::size_t >(esuf[2*f]);
     119                 :            : 
     120                 :            :       // access solutions at boundary element
     121                 :            :       tk::real rhob(0.0), rhoE(0.0);
     122         [ -  - ]:          0 :       for (std::size_t k=0; k<nspec; ++k) {
     123                 :          0 :         rhob += U(el, multispecies::densityDofIdx(nspec,k,rdof,0));
     124                 :            :       }
     125                 :          0 :       rhoE = U(el, multispecies::energyDofIdx(nspec,0,rdof,0));
     126                 :            : 
     127                 :          0 :       out[i+0][j] = rhob;
     128                 :          0 :       out[i+1][j] = U(el, multispecies::momentumDofIdx(nspec,0,rdof,0))/rhob;
     129                 :          0 :       out[i+2][j] = U(el, multispecies::momentumDofIdx(nspec,1,rdof,0))/rhob;
     130                 :          0 :       out[i+3][j] = U(el, multispecies::momentumDofIdx(nspec,2,rdof,0))/rhob;
     131                 :          0 :       out[i+4][j] = rhoE;
     132                 :          0 :       ++j;
     133                 :            :     }
     134                 :            :   }
     135                 :            : 
     136                 :          0 :   return out;
     137                 :            : }
     138                 :            : 
     139         [ -  - ]:          0 : std::vector< std::string > MultiSpeciesHistNames()
     140                 :            : // *****************************************************************************
     141                 :            : // Return time history field names to be output to file
     142                 :            : //! \note Every time history point will output these fields.
     143                 :            : //! \return Vector of strings labelling time history fields output in file
     144                 :            : // *****************************************************************************
     145                 :            : {
     146                 :            :   std::vector< std::string > n;
     147                 :          0 :   auto nspec = g_inputdeck.get< tag::multispecies, tag::nspec >();
     148                 :            : 
     149         [ -  - ]:          0 :   n.push_back( "density" );
     150         [ -  - ]:          0 :   n.push_back( "x-velocity" );
     151         [ -  - ]:          0 :   n.push_back( "y-velocity" );
     152         [ -  - ]:          0 :   n.push_back( "z-velocity" );
     153         [ -  - ]:          0 :   n.push_back( "energy" );
     154         [ -  - ]:          0 :   n.push_back( "pressure" );
     155         [ -  - ]:          0 :   for (std::size_t k=0; k<nspec; ++k)
     156 [ -  - ][ -  - ]:          0 :     n.push_back( "massfrac"+std::to_string(k+1) );
         [ -  - ][ -  - ]
     157                 :            : 
     158                 :          0 :   return n;
     159                 :            : }
     160                 :            : 
     161                 :          0 : std::vector< std::string > MultiSpeciesDiagNames(std::size_t nspec)
     162                 :            : // *****************************************************************************
     163                 :            : // Return diagnostic var names to be output to file
     164                 :            : //! \param[in] nspec Number of species in systen
     165                 :            : //! \return Vector of strings labelling diagnostic fields output in file
     166                 :            : // *****************************************************************************
     167                 :            : {
     168                 :            :   std::vector< std::string > n;
     169                 :            : 
     170         [ -  - ]:          0 :   for (std::size_t k=0; k<nspec; ++k)
     171 [ -  - ][ -  - ]:          0 :     n.push_back( "fr"+std::to_string(k+1) );
         [ -  - ][ -  - ]
     172         [ -  - ]:          0 :   n.push_back( "ru" );
     173         [ -  - ]:          0 :   n.push_back( "rv" );
     174         [ -  - ]:          0 :   n.push_back( "rw" );
     175         [ -  - ]:          0 :   n.push_back( "re0" );
     176                 :            : 
     177                 :          0 :   return n;
     178                 :            : }
     179                 :            : 
     180                 :            : } //inciter::